PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC5BG058860.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 864aa MW: 94422.7 Da PI: 6.4676 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.1e-18 | 10 | 67 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+++Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ TRIDC5BG058860.3 10 YVRYTPEQVDALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 67 6789****************************************************97 PP | |||||||
2 | START | 174.8 | 5.4e-55 | 158 | 365 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +++l+ i +g g+++ TRIDC5BG058860.3 158 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLQIIPTGngGTIE 249 68999*****************************************************.8888888888************************ PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l++++++a+++l++ Rdf+++Ry+ l++g++vi+++S+++ + p+ ++++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++l TRIDC5BG058860.3 250 LIYMQTYAPTTLAApRDFWILRYTSGLEDGSLVICERSLTQATGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVL 342 ************999*****************************999999******************************************* PP HHHHHHHHHHHHHHHHHHTXXXX CS START 182 rslvksglaegaktwvatlqrqc 204 r+l++s + ++k++ a+l++ + TRIDC5BG058860.3 343 RPLYESPKILAQKMTIAALRHIR 365 ******************99865 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 864 aa Download sequence |
GAPQVDTGKY VRYTPEQVDA LERVYSECPK PSSLRRQQLI RECPILSNIE PKQIKVWFQN 60 RRCREKQRKE ASRLQTVNRK LSAMNKLLME ENDRLQKQVS RLVYENGYMR THLNNPSVAT 120 TDTSCESVVT SGQHQQQQNA VVPRPQRDAN NPAGLLAIAE ETLAEFLSKA TGTAVDWVQM 180 VGMKPGPDSI GIIAVSHNCS GVAARACGLV SLEPTKVAEI LKDRPSWYRD CRCVDVLQII 240 PTGNGGTIEL IYMQTYAPTT LAAPRDFWIL RYTSGLEDGS LVICERSLTQ ATGGPSGPNT 300 PNFVRAEVLP SGYLIRPCEG GGSMIHIVDH VDLDAWSVPE VLRPLYESPK ILAQKMTIAA 360 LRHIRQIAHE SSGEMPYGGG RQPAVLRTFS QRLSRGFNDA VNGFLDDGWS LMSSDGAEDV 420 TIAINSSPNK LAVSHVNPSQ MSTAIGGGVL CAKASMLLQN VPPALLVRFL REHRSEWADP 480 GVDAYSAAAL RASPYAVPGL RASGFMGSQV ILPLAHTLEH EEFLEVIRLE GHSLCHDEVV 540 LSRDMYLLQV SFQPALASLH HFHFIWCTAL TNLYLVWQLC SGVDENAAGA CAQLVFAPID 600 ESFADDAPLL PSGFRVIPLD AKTDAPSATR TLDLASTLEV GPGGTRAPSD ASSTSNTRSV 660 LTIAFQFSYE NHLRESVAAM ARQYVRTVVA SVQRVAMAIA PSRPGGQLEM KNPPGSPEAH 720 TLARWIGRSY RFHTGAELLC TESQSADASL KALWQHSDSI MCCSLKAAPV FTFANQAGLD 780 MLETTLIALQ DISLEKILDD DGRKALCSEF PKIMQQGFAY LPGGVCVSSM GRPVSYEQAV 840 AWKVLGDDDA PHCLAFMFVN WSFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC5BG058860.3 |