PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5BG058860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 798aa MW: 86418 Da PI: 6.977 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.7e-18 | 37 | 94 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+++Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ TRIDC5BG058860.1 37 YVRYTPEQVDALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 94 6789****************************************************97 PP | |||||||
2 | START | 175 | 4.7e-55 | 185 | 392 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +++l+ i +g g+++ TRIDC5BG058860.1 185 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLQIIPTGngGTIE 276 68999*****************************************************.8888888888************************ PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l++++++a+++l++ Rdf+++Ry+ l++g++vi+++S+++ + p+ ++++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++l TRIDC5BG058860.1 277 LIYMQTYAPTTLAApRDFWILRYTSGLEDGSLVICERSLTQATGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVL 369 ************999*****************************999999******************************************* PP HHHHHHHHHHHHHHHHHHTXXXX CS START 182 rslvksglaegaktwvatlqrqc 204 r+l++s + ++k++ a+l++ + TRIDC5BG058860.1 370 RPLYESPKILAQKMTIAALRHIR 392 ******************99865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 798 aa Download sequence |
MAGAMVVHGH GGGGRDRDRD RSSPGGSGAP QVDTGKYVRY TPEQVDALER VYSECPKPSS 60 LRRQQLIREC PILSNIEPKQ IKVWFQNRRC REKQRKEASR LQTVNRKLSA MNKLLMEEND 120 RLQKQVSRLV YENGYMRTHL NNPSVATTDT SCESVVTSGQ HQQQQNAVVP RPQRDANNPA 180 GLLAIAEETL AEFLSKATGT AVDWVQMVGM KPGPDSIGII AVSHNCSGVA ARACGLVSLE 240 PTKVAEILKD RPSWYRDCRC VDVLQIIPTG NGGTIELIYM QTYAPTTLAA PRDFWILRYT 300 SGLEDGSLVI CERSLTQATG GPSGPNTPNF VRAEVLPSGY LIRPCEGGGS MIHIVDHVDL 360 DAWSVPEVLR PLYESPKILA QKMTIAALRH IRQIAHESSG EMPYGGGRQP AVLRTFSQRL 420 SRGFNDAVNG FLDDGWSLMS SDGAEDVTIA INSSPNKLAV SHVNPSQMST AIGGGVLCAK 480 ASMLLQNVPP ALLVRFLREH RSEWADPGVD AYSAAALRAS PYAVPGLRAS GFMGSQVILP 540 LAHTLEHEEF LEVIRLEGHS LCHDEVVLSR DMYLLQLCSG VDENAAGACA QLVFAPIDES 600 FADDAPLLPS GFRVIPLDAK TDAPSATRTL DLASTLEVGP GGTRAPSDAS STSNTRSVLT 660 IAFQFSYENH LRESVAAMAR QYVRTVVASV QRVAMAIAPS RPGGQLEMKN PPGSPEAHTL 720 ARWIGRSYRF HTGAELLCTE SQSADASLKA LWQHSDSIMC CSLKVGCCSG VHLRQPGRAG 780 HAGDDADRAP GHLAREDP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5BG058860.1 |