PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG051980.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 633aa MW: 70928.4 Da PI: 7.3668

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG051980.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	62.8	7.2e-20	546	633	1	91
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL++cA+av+++d+++++ ++ +l++++s +gdp qRl ay++e+L arla+s++++ykal+++e + ss+ ++++++++e++P++ TRIDC5BG051980.4 546 LKKLLISCARAVEAKDMSAVDMMVPELRKMVSVSGDPHQRLGAYIVEGLVARLASSGHSIYKALKCKEPR---SSDLMSYMHFLYEACPYF 633 5799***************************************************************9...999***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence
MDLLTYLCDS LSSCLWISPS EGTRQALNLS YNNLPHYLKI CLLCLNMYPD GHTIWKDDLV 60 KQWVAEGFIH TTEGQDMEKV AASYFNELIN RRFIQTLCSK YNNEVLSCTV HDVVHDLIAD 120 KCSEENFNMV IDSSRRNVAL PQKVRRLSLL FGDAKCVKTP ANMRRSQVRS LTIFGLFESM 180 PSISEFKLLR VLNLQLSGYG DRNTINLTGI SDLFQLRYLK IACDICIQLP NHMLRLQCLE 240 TLVLDSEVTA VPWDIIHLPS LLHLSLLVMT NLLDWIGSMR LIGKLNNLRD LHLTYSVPSS 300 DHLKRSMEAL GSQLSGHANL KTLALVNGPC HKNAFVCDAL KVTVSWEGLV PPPVLEVFEW 360 SLHSCVLTRI PKWIGELGKL HILKIAVRDL PRDGIDAVRG LPALTALSLY LQTASVERIV 420 FDKVGFSVLN YFNLRCSVPC LKFEANAMPN LRKLKIGFNA PRARMDQHGA STAISIDHLA 480 SLKEICAKIR GACADTESAL ATAISNHPSN PMINVQFVDY TFDGDELTHE NKGQDEVLVE 540 GQDGYLKKLL ISCARAVEAK DMSAVDMMVP ELRKMVSVSG DPHQRLGAYI VEGLVARLAS 600 SGHSIYKALK CKEPRSSDLM SYMHFLYEAC PYF

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence

MDLLTYLCDS LSSCLWISPS EGTRQALNLS YNNLPHYLKI CLLCLNMYPD GHTIWKDDLV  60
KQWVAEGFIH TTEGQDMEKV AASYFNELIN RRFIQTLCSK YNNEVLSCTV HDVVHDLIAD  120
KCSEENFNMV IDSSRRNVAL PQKVRRLSLL FGDAKCVKTP ANMRRSQVRS LTIFGLFESM  180
PSISEFKLLR VLNLQLSGYG DRNTINLTGI SDLFQLRYLK IACDICIQLP NHMLRLQCLE  240
TLVLDSEVTA VPWDIIHLPS LLHLSLLVMT NLLDWIGSMR LIGKLNNLRD LHLTYSVPSS  300
DHLKRSMEAL GSQLSGHANL KTLALVNGPC HKNAFVCDAL KVTVSWEGLV PPPVLEVFEW  360
SLHSCVLTRI PKWIGELGKL HILKIAVRDL PRDGIDAVRG LPALTALSLY LQTASVERIV  420
FDKVGFSVLN YFNLRCSVPC LKFEANAMPN LRKLKIGFNA PRARMDQHGA STAISIDHLA  480
SLKEICAKIR GACADTESAL ATAISNHPSN PMINVQFVDY TFDGDELTHE NKGQDEVLVE  540
GQDGYLKKLL ISCARAVEAK DMSAVDMMVP ELRKMVSVSG DPHQRLGAYI VEGLVARLAS  600
SGHSIYKALK CKEPRSSDLM SYMHFLYEAC PYF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50600.1	2e-31	GRAS family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG051980.4