PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5BG050400.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 788aa MW: 84786.9 Da PI: 5.8511 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.4 | 1.9e-21 | 60 | 115 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k TRIDC5BG050400.6 60 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 115 688999***********************************************999 PP | |||||||
2 | START | 169.3 | 2.5e-53 | 272 | 498 | 4 | 205 |
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 ++a++elvk ++++p+W s e +n de+++ f++ + + +ea r++g+ + ++++lv++l++ ++W+e+++ +a+t+e TRIDC5BG050400.6 272 LAAMEELVKVTQVDDPLWQPSLdiglETLNFDEYRRAFARVLGpspagYVSEATREVGIAIINSVDLVNSLMNEVPRWSEMFPcvvaRASTME 364 789*******************9***************88666************************************************** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskv 164 is g g +qlm aelq+lsplvp R+++f+R+++q+ +g w+ivdvSvd p + ++++ ++llpSg+++e+++ng+ kv TRIDC5BG050400.6 365 IISCGmggtrsGSIQLMRAELQVLSPLVPiREVTFLRFCKQHADGLWAIVDVSVDGVLRPDSgtgagPAGYMGCRLLPSGCIVEDMQNGYAKV 457 *******************************************************99888877778789************************ PP EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 twv h++++++ +h+l+r+l++sg+a ga++w+a lqrqce TRIDC5BG050400.6 458 TWVVHAEYDEAAVHELYRPLLRSGQALGARRWLASLQRQCE 498 ****************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 788 aa Download sequence |
MEGGGQLGGA FMGSTGSGGD GDSLGRARED ENDSRSGSDN LDGASADELD PDNSNPRKKK 60 KRYHRHTPQQ IQELEAVFKE CPHPDEKQRM ELSRRLNLES RQVKFWFQNR RTQMKTQIER 120 HENALLRQEN DKLRTENMTI REAMRSPTCG NCGGAAVLGE VSLEEQHLRI ENSRLKDELD 180 RVCALAGKFL GRPVSAISSP LSLPSSLCSG LDLAVGSNNG FMGMGMQSIP DLMGGGSAAM 240 RLPAGIMGGG LDDGLGGDGG AIDRGALLEL GLAAMEELVK VTQVDDPLWQ PSLDIGLETL 300 NFDEYRRAFA RVLGPSPAGY VSEATREVGI AIINSVDLVN SLMNEVPRWS EMFPCVVARA 360 STMEIISCGM GGTRSGSIQL MRAELQVLSP LVPIREVTFL RFCKQHADGL WAIVDVSVDG 420 VLRPDSGTGA GPAGYMGCRL LPSGCIVEDM QNGYAKVTWV VHAEYDEAAV HELYRPLLRS 480 GQALGARRWL ASLQRQCEYH AILCSNPHPN HGDRHEAISP AGRRCMLRLA QRMADNFCAG 540 VCATAAQKWR RLDEWRVEGA GGRDPAGGED KVRMMARQSV GAPGEPPGVV LSATTSVRLP 600 GTLPQRVFDY LRDEQRRGEW DILANGEAMQ EMDHIAKGQH HGNAVSLLRP NATSGNQNNM 660 LILQETCTDA SGSLVVYAPV DVQSMHVVMG GGDSAYVSLL PSGFAILPDG HTTPATATDP 720 SPQGSSPNAH AGSSNNNPGS LVTVAFQILV NNLPTAKLTV ESVDTVSNLL SCTIQKIKSA 780 LQASIISP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 62 | RKKKKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5BG050400.6 |