PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG047650.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 528aa MW: 59166 Da PI: 10.3848

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG047650.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.1	4e-08	71	115	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E+++l+ v++ G+++W Ia +g+ Rt+ qc r+q TRIDC5BG047650.6 71 NAWTACEEKRLILTVQEKGMHNWINIAVALGTQRTPFQCLARYQR 115 68***************************99********96 PP
2	Myb_DNA-binding	44	5.2e-14	124	168	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd++l+ av+ +G + W ++++ + gR ++qc +r++k l TRIDC5BG047650.6 124 RTWTKEEDLQLLAAVQTYGCN-WQLVSANLV-GRIGNQCSNRYRKTL 168 68***************88.*****.**********975 PP
3	Myb_DNA-binding	44.7	3.1e-14	176	221	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+++Ed++l vk++ +g+W++Ia+ ++ gRt qc +rw+++l TRIDC5BG047650.6 176 GRWSEDEDKRLMVSVKLFRSGSWNKIAQFVP-GRTQSQCSERWRNVL 221 8****************************.**********986 PP
4	Myb_DNA-binding	34.7	4.1e-11	228	271	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g W +eEd +l+ v++ G+ W++Ia m +Rt+++c rw TRIDC5BG047650.6 228 GEWRPEEDSKLLASVHEVGPC-WSKIAGAMIPHRTDNMCLRRWKR 271 79***************88.*99999*********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MEGSSGDFSA VDMAYALTNT VGNFEATPEI LRSVLPLVNW DFIAAMYLPG RSGAECESRW 60 LNHDDPLINH NAWTACEEKR LILTVQEKGM HNWINIAVAL GTQRTPFQCL ARYQRSLNPH 120 ILKRTWTKEE DLQLLAAVQT YGCNWQLVSA NLVGRIGNQC SNRYRKTLIP ERKRVGRWSE 180 DEDKRLMVSV KLFRSGSWNK IAQFVPGRTQ SQCSERWRNV LDPDIEHGEW RPEEDSKLLA 240 SVHEVGPCWS KIAGAMIPHR TDNMCLRRWK RLCQDELPLM IAANQVKKSI FQTNFVDRET 300 ERPAICPSDF PSLVYSKVDK GDENTVSDQV KKPRKRSRKS SVDNVPPNDP SKSSADAAAV 360 NTTKRKSRKK LSGIGAENQT GEDITVSDGV NNSSRGHSRA RKRKVTTDGD VVVQTRMRGS 420 ISVDNELTLD ILGGPISFDD EAPTNQKRDP TSVGKEGTAK KRTRGSVSVG NEGPVKKKMR 480 GSISVGDGRA VKNRMRGSVS IDNQGNTTKR KRVSRGNQPK AIQKQMVR

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MEGSSGDFSA VDMAYALTNT VGNFEATPEI LRSVLPLVNW DFIAAMYLPG RSGAECESRW  60
LNHDDPLINH NAWTACEEKR LILTVQEKGM HNWINIAVAL GTQRTPFQCL ARYQRSLNPH  120
ILKRTWTKEE DLQLLAAVQT YGCNWQLVSA NLVGRIGNQC SNRYRKTLIP ERKRVGRWSE  180
DEDKRLMVSV KLFRSGSWNK IAQFVPGRTQ SQCSERWRNV LDPDIEHGEW RPEEDSKLLA  240
SVHEVGPCWS KIAGAMIPHR TDNMCLRRWK RLCQDELPLM IAANQVKKSI FQTNFVDRET  300
ERPAICPSDF PSLVYSKVDK GDENTVSDQV KKPRKRSRKS SVDNVPPNDP SKSSADAAAV  360
NTTKRKSRKK LSGIGAENQT GEDITVSDGV NNSSRGHSRA RKRKVTTDGD VVVQTRMRGS  420
ISVDNELTLD ILGGPISFDD EAPTNQKRDP TSVGKEGTAK KRTRGSVSVG NEGPVKKKMR  480
GSISVGDGRA VKNRMRGSVS IDNQGNTTKR KRVSRGNQPK AIQKQMVR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	331	339	KKPRKRSRK
2	459	465	AKKRTRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	1e-106	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG047650.6