PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG047650.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 611aa MW: 67853.8 Da PI: 10.2107

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG047650.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.9	4.8e-08	42	86	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E+++l+ v++ G+++W Ia +g+ Rt+ qc r+q TRIDC5BG047650.2 42 NAWTACEEKRLILTVQEKGMHNWINIAVALGTQRTPFQCLARYQR 86 68***************************99********96 PP
2	Myb_DNA-binding	43.7	6.2e-14	95	139	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd++l+ av+ +G + W ++++ + gR ++qc +r++k l TRIDC5BG047650.2 95 RTWTKEEDLQLLAAVQTYGCN-WQLVSANLV-GRIGNQCSNRYRKTL 139 68***************88.*****.**********975 PP
3	Myb_DNA-binding	44.4	3.8e-14	147	192	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+++Ed++l vk++ +g+W++Ia+ ++ gRt qc +rw+++l TRIDC5BG047650.2 147 GRWSEDEDKRLMVSVKLFRSGSWNKIAQFVP-GRTQSQCSERWRNVL 192 8****************************.**********986 PP
4	Myb_DNA-binding	34.4	4.9e-11	199	242	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g W +eEd +l+ v++ G+ W++Ia m +Rt+++c rw TRIDC5BG047650.2 199 GEWRPEEDSKLLASVHEVGPC-WSKIAGAMIPHRTDNMCLRRWKR 242 79***************88.*99999*********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
PVLNANQVCV CICVFNWPVL IQEIVILFSR WLNHDDPLIN HNAWTACEEK RLILTVQEKG 60 MHNWINIAVA LGTQRTPFQC LARYQRSLNP HILKRTWTKE EDLQLLAAVQ TYGCNWQLVS 120 ANLVGRIGNQ CSNRYRKTLI PERKRVGRWS EDEDKRLMVS VKLFRSGSWN KIAQFVPGRT 180 QSQCSERWRN VLDPDIEHGE WRPEEDSKLL ASVHEVGPCW SKIAGAMIPH RTDNMCLRRW 240 KRLCQDELPL MIAANQVKKS IFQTNFVDRE TERPAICPSD FPSLVYSKVD KGDENTVSDQ 300 VKKPRKRSRK SSVDNVPPND PSKSSADAAA VNTTKRKSRK KLSGIGAENQ TGEDITVSDG 360 VNNSSRGHSR ARKRKVTTDG DVVVQTRMRG SISVDNELTL DILGGPISFD DEAPTNQKRD 420 PTSVGKEGTA KKRTRGSVSV GNEGPVKKKM RGSISVGDGR AVKNRMRGSV SIDNQGNTTK 480 RKRVSRKSAK GNSKTDGEVN TCEMDLPSVP SEAAAERGID TGNTNKMKRK STPRPKLINM 540 AEGTVDEYSR LADCISFARG NGTSKNNSVM PINNAMQSGG PSGENPQVAI SARLDPTSIE 600 NGSSPNTQVV D

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

PVLNANQVCV CICVFNWPVL IQEIVILFSR WLNHDDPLIN HNAWTACEEK RLILTVQEKG  60
MHNWINIAVA LGTQRTPFQC LARYQRSLNP HILKRTWTKE EDLQLLAAVQ TYGCNWQLVS  120
ANLVGRIGNQ CSNRYRKTLI PERKRVGRWS EDEDKRLMVS VKLFRSGSWN KIAQFVPGRT  180
QSQCSERWRN VLDPDIEHGE WRPEEDSKLL ASVHEVGPCW SKIAGAMIPH RTDNMCLRRW  240
KRLCQDELPL MIAANQVKKS IFQTNFVDRE TERPAICPSD FPSLVYSKVD KGDENTVSDQ  300
VKKPRKRSRK SSVDNVPPND PSKSSADAAA VNTTKRKSRK KLSGIGAENQ TGEDITVSDG  360
VNNSSRGHSR ARKRKVTTDG DVVVQTRMRG SISVDNELTL DILGGPISFD DEAPTNQKRD  420
PTSVGKEGTA KKRTRGSVSV GNEGPVKKKM RGSISVGDGR AVKNRMRGSV SIDNQGNTTK  480
RKRVSRKSAK GNSKTDGEVN TCEMDLPSVP SEAAAERGID TGNTNKMKRK STPRPKLINM  540
AEGTVDEYSR LADCISFARG NGTSKNNSVM PINNAMQSGG PSGENPQVAI SARLDPTSIE  600
NGSSPNTQVV D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	302	310	KKPRKRSRK
2	430	436	AKKRTRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	1e-89	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG047650.2