PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG046850.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 427aa MW: 44633.9 Da PI: 7.294

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG046850.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.7	1.1e-40	120	196	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCe+hsk+p v+v+g+e rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+q TRIDC5BG046850.2 120 CAVDGCKADLSKCRDYHRRHKVCEAHSKTPLVVVAGREMRFCQQCSRFHLLAEFDEAKRSCRKRLDGHNRRRRKPQV 196 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MDWDLKMPGS WDLAELEHDG VPAMAAPAAA GIAAAAARGP PGRPECSVDL KLGGLGEFGP 60 AADGAMKQPP VATAAAAANG PAASLSASAS NAAAVVPSAS PLKRPRPGAG GAGAGHCPSC 120 AVDGCKADLS KCRDYHRRHK VCEAHSKTPL VVVAGREMRF CQQCSRFHLL AEFDEAKRSC 180 RKRLDGHNRR RRKPQVDSMN SGSFMTTQQG TRFASFSAPR PEPSWSGIIK SEDSNPYYTT 240 THQINFAGSS SSYSKEGRRF PFLHEGDQMS FSTGAPALEI PPVCQPLLKA VAPPPPPPPE 300 SSSSNKMFSD GQLTHVLDSD CALSLLSSPA NSSSVDVSRM VRPSEHIPSV PNLQQFGSSS 360 WFACSQASSA ATGFAAFPGG MDGEQLNAGG ALVPSSNDNE MNCHGIFHVG ADGSSEGTSP 420 SLPFSWQ

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MDWDLKMPGS WDLAELEHDG VPAMAAPAAA GIAAAAARGP PGRPECSVDL KLGGLGEFGP  60
AADGAMKQPP VATAAAAANG PAASLSASAS NAAAVVPSAS PLKRPRPGAG GAGAGHCPSC  120
AVDGCKADLS KCRDYHRRHK VCEAHSKTPL VVVAGREMRF CQQCSRFHLL AEFDEAKRSC  180
RKRLDGHNRR RRKPQVDSMN SGSFMTTQQG TRFASFSAPR PEPSWSGIIK SEDSNPYYTT  240
THQINFAGSS SSYSKEGRRF PFLHEGDQMS FSTGAPALEI PPVCQPLLKA VAPPPPPPPE  300
SSSSNKMFSD GQLTHVLDSD CALSLLSSPA NSSSVDVSRM VRPSEHIPSV PNLQQFGSSS  360
WFACSQASSA ATGFAAFPGG MDGEQLNAGG ALVPSSNDNE MNCHGIFHVG ADGSSEGTSP  420
SLPFSWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	107	KRPRP
2	177	194	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-40	SBP family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG046850.2