PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5BG046390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 86aa MW: 9574.8 Da PI: 9.0043 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 65.3 | 1.5e-20 | 39 | 85 | 1 | 47 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+lrr+C ++C+lapyfpa++p+++anvh++FGasnv +ll+ TRIDC5BG046390.1 39 RCAACKYLRRRCGHGCALAPYFPASRPRRYANVHRVFGASNVARLLQ 85 6******************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence |
LTRRSIARSI TMSTAGNEVE PEELQEEEEE EGGGGNPRRC AACKYLRRRC GHGCALAPYF 60 PASRPRRYAN VHRVFGASNV ARLLQV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-21 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5BG046390.1 |