PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5BG042480.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YC | ||||||||
Protein Properties | Length: 188aa MW: 20297.1 Da PI: 5.2554 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 169.6 | 3.8e-53 | 42 | 145 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql++fw++q ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaa++rt++fd TRIDC5BG042480.2 42 QLQVFWAEQyreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFD 134 89******99999******************************************************************************** PP NF-YC 91 flvdivprdel 101 flvdivprd+ TRIDC5BG042480.2 135 FLVDIVPRDDA 145 ********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence |
GYPPGAYPPP PGAPAAAYPP QLYAPPGAAA AQQAAAQQQQ QQLQVFWAEQ YREIEATTDF 60 KNHNLPLARI KKIMKADEDV RMIAAEAPVV FARACEMFIL ELTHRGWAHA EENKRRTLQK 120 SDIAAAIART EVFDFLVDIV PRDDAKDAEA AAAAAMATAA AGIPRPAAGV PATDPSMAYY 180 YVPQQIVV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 121 | RRTLQKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 3e-58 | NF-YC family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5BG042480.2 |