PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG038900.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 361aa MW: 38064.1 Da PI: 12.2664

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG038900.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.7	3.6e-12	203	232	27	56
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 ++++ LAk+l+L rqV vWFqNrRa+ k TRIDC5BG038900.5 203 RKQKVALAKQLNLRPRQVEVWFQNRRARTK 232 567889**********************98 PP
2	HD-ZIP_I/II	92.7	4e-30	203	268	26	92
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk TRIDC5BG038900.5 203 RKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 268 489***********************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
GAGVELGGGH GGRRPGAGSW ARGRPGGEEG GGGEEGPGCH RRRRQEGARV GVRLFAGADD 60 AAHASAHGAQ PRLPVAVREQ SDLLRRAFGG VDAGVRREPG AVLRGLGLGR LHGGGGGGGR 120 AGGHRRGSAG GRLVLAQRQR GLLPDGLLRA GRPRRQRRRP GRRRLPRQRR RRRRLGAQEA 180 APLQGAGRVP GGELQGAQHP QPRKQKVALA KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC 240 EYLKRCCETL TEENRRLQKE LAELRALKTV HPFYMHLPAT TLSMCPSCER VASNSAPGTA 300 AAPSPAPASA APAPASGAGI GAAAAPEQHR PSSFAALFSS ARSFPLASSQ PQAPLPAPSS 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

GAGVELGGGH GGRRPGAGSW ARGRPGGEEG GGGEEGPGCH RRRRQEGARV GVRLFAGADD  60
AAHASAHGAQ PRLPVAVREQ SDLLRRAFGG VDAGVRREPG AVLRGLGLGR LHGGGGGGGR  120
AGGHRRGSAG GRLVLAQRQR GLLPDGLLRA GRPRRQRRRP GRRRLPRQRR RRRRLGAQEA  180
APLQGAGRVP GGELQGAQHP QPRKQKVALA KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC  240
EYLKRCCETL TEENRRLQKE LAELRALKTV HPFYMHLPAT TLSMCPSCER VASNSAPGTA  300
AAPSPAPASA APAPASGAGI GAAAAPEQHR PSSFAALFSS ARSFPLASSQ PQAPLPAPSS  360
S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	159	RRQRRR
2	157	174	RRRPGRRRLPRQRRRRRR
3	157	175	RRRPGRRRLPRQRRRRRRL
4	158	176	RRRPGRRRLPRQRRRRRRL
5	161	168	GRRRLPRQ
6	167	174	RQRRRRRR
7	168	174	QRRRRRR
8	169	174	RRRRRR
9	227	235	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-51	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG038900.5