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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC5BG038900.3 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 328aa MW: 35883 Da PI: 12.4652 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 37.8 | 3.2e-12 | 187 | 216 | 27 | 56 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56
++++ LAk+l+L rqV vWFqNrRa+ k
TRIDC5BG038900.3 187 RKQKVALAKQLNLRPRQVEVWFQNRRARTK 216
567889**********************98 PP
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| 2 | HD-ZIP_I/II | 93 | 3.4e-30 | 187 | 252 | 26 | 92 |
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
TRIDC5BG038900.3 187 RKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 252
489***********************************************************9.555 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 328 aa Download sequence |
GGRRPGAGSW ARGRPGGEEG GGGEEGPGCH RRRRQEGARV GVRLFAGADD AAHASAHGAQ 60 PRLPVAVREQ AFGGVDAGVR REPGAVLRGL GLGRLHGGGG GGGRAGGHRR GSAGGRLVLA 120 QRQRGLLPDG LLRAGRPRRQ RRRPGRRRLP RQRRRRRRLG AQEAAPLQGA GRVPGGELQG 180 AQHPQPRKQK VALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR 240 LQKELAELRA LKTVHPFYMH LPATTLSMCP SCERVASNSA PGTAAALGRQ PLRSSTGPRR 300 SPRCSRRPGA SRWPRPSPKL HCRRRRAR |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 138 | 143 | RRQRRR |
| 2 | 141 | 158 | RRRPGRRRLPRQRRRRRR |
| 3 | 141 | 159 | RRRPGRRRLPRQRRRRRRL |
| 4 | 142 | 160 | RRRPGRRRLPRQRRRRRRL |
| 5 | 145 | 152 | GRRRLPRQ |
| 6 | 151 | 158 | RQRRRRRR |
| 7 | 152 | 158 | QRRRRRR |
| 8 | 153 | 158 | RRRRRR |
| 9 | 211 | 219 | RRARTKLKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G06710.1 | 4e-55 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC5BG038900.3 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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