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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC5BG038900.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 284aa MW: 30427.9 Da PI: 12.3893 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 38.1 | 2.6e-12 | 126 | 155 | 27 | 56 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56
++++ LAk+l+L rqV vWFqNrRa+ k
TRIDC5BG038900.2 126 RKQKVALAKQLNLRPRQVEVWFQNRRARTK 155
567889**********************98 PP
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| 2 | HD-ZIP_I/II | 93.3 | 2.6e-30 | 126 | 191 | 26 | 92 |
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
TRIDC5BG038900.2 126 RKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 191
489***********************************************************9.555 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 284 aa Download sequence |
MGRSDLLRRA FGGVDAGVRR EPGAVLRGLG LGRLHGGGGG GGRAGGHRRG SAGGRLVLAQ 60 RQRGLLPDGL LRAGRPRRQR RRPGRRRLPR QRRRRRRLGA QEAAPLQGAG RVPGGELQGA 120 QHPQPRKQKV ALAKQLNLRP RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ETLTEENRRL 180 QKELAELRAL KTVHPFYMHL PATTLSMCPS CERVASNSAP GTAAAPSPAP ASAAPAPASG 240 AGIGAAAAPE QHRPSSFAAL FSSARSFPLA SSQPQAPLPA PSSS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 77 | 82 | RRQRRR |
| 2 | 80 | 97 | RRRPGRRRLPRQRRRRRR |
| 3 | 80 | 98 | RRRPGRRRLPRQRRRRRRL |
| 4 | 81 | 99 | RRRPGRRRLPRQRRRRRRL |
| 5 | 84 | 91 | GRRRLPRQ |
| 6 | 90 | 97 | RQRRRRRR |
| 7 | 91 | 97 | QRRRRRR |
| 8 | 92 | 97 | RRRRRR |
| 9 | 150 | 158 | RRARTKLKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G06710.1 | 2e-52 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC5BG038900.2 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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