PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG037390.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

AP2

Protein Properties

Length: 397aa MW: 43079 Da PI: 7.1376

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG037390.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.6	2.4e-16	55	114	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s ++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g TRIDC5BG037390.2 55 SVHRGVTRHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGAYDEEEAAARAYDLAALKYWG 114 689****************888866656446***********************98 PP
2	AP2	52	1.7e-16	157	208	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g TRIDC5BG037390.2 157 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 208 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MAKPRKNSAA AAAAAAANSN AIASAAADAG ADVRAKPKKR TRKSVPRESP SQRSSVHRGV 60 TRHRWTGRFE AHLWDKNSWN ESQNKKGKQV YLGAYDEEEA AARAYDLAAL KYWGPDTILN 120 FPLSIYEEEL KEMEGQSREE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG 180 NKYLYLGTYA TQEEAAMAYD MAAIEYRGLN AVTNFDLSRY IKWLRPGAAD VAGAAGRSAH 240 PMLASLAAQE LPAIDLDAMA FQHDLHQQGM EDGMAAEAAA AAAGAQFPLL PARAATLGHT 300 PTTSALSLLL QSPKFKEMIE RTSAAESSTT TSSSSMSTPP PPQATRDDGA SPQCSFPEDI 360 QTFFGSDDGV AYTDVDGLFF GDLSAYASPA FHFELDL

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MAKPRKNSAA AAAAAAANSN AIASAAADAG ADVRAKPKKR TRKSVPRESP SQRSSVHRGV  60
TRHRWTGRFE AHLWDKNSWN ESQNKKGKQV YLGAYDEEEA AARAYDLAAL KYWGPDTILN  120
FPLSIYEEEL KEMEGQSREE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG  180
NKYLYLGTYA TQEEAAMAYD MAAIEYRGLN AVTNFDLSRY IKWLRPGAAD VAGAAGRSAH  240
PMLASLAAQE LPAIDLDAMA FQHDLHQQGM EDGMAAEAAA AAAGAQFPLL PARAATLGHT  300
PTTSALSLLL QSPKFKEMIE RTSAAESSTT TSSSSMSTPP PPQATRDDGA SPQCSFPEDI  360
QTFFGSDDGV AYTDVDGLFF GDLSAYASPA FHFELDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	4e-97	AP2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG037390.2