PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5BG033920.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 288aa    MW: 31233.6 Da    PI: 4.6348
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5BG033920.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.3e-1968122356
                       --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++++t+eq+++Le+ Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  TRIDC5BG033920.2  68 RKRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 122
                       45589*************98**********************************9 PP
2HD-ZIP_I/II122.91.5e-3967160193
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       e+krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d++aL++a+d+l + +++L +++++Lr++++
  TRIDC5BG033920.2  67 ERKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLEQDFDALRAAHDELLAGRDALLADNHRLRSQVT 159
                       69*****************9999*******************************************************************997 PP

       HD-ZIP_I/II  93 e 93 
                       +
  TRIDC5BG033920.2 160 S 160
                       5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MESGRLIFGS AAPCRAAGGG GGQMMLFGGS GSFLGGSPVV AGVEDGRRKR PFLTTVDEEL  60
QLEEAPERKR RLTAEQVRAL ERSFEEEKRK LEPERKSELA RRLGIAPRQV AVWFQNRRAR  120
WKAKQLEQDF DALRAAHDEL LAGRDALLAD NHRLRSQVTS LTEKLQAKES SEPEGPTAVS  180
GRTDAGVPAV EPKEGYAACD GAAGLLADFA GGANDSPESN SYLADARSPP SSSDDDCPGA  240
VGGELNSCGF FLPEYAMLDV AAAERGSVQQ GEEEEEEAQR KYWAWFWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772ERKRRL
2117125RRARWKAKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-38HD-ZIP family protein