PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5BG025010.5
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 319aa    MW: 35815.7 Da    PI: 4.659
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5BG025010.5genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.76.1e-131370455
               AP2  4 kGVrwdkkrgrWvAeIrd.pse...ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                      + V +++++gr++A+++d  +    ++ k+ ++++lg ++t+e Aa+a++ a++k++g
  TRIDC5BG025010.5 13 QYVLRHRWTGRFEAHLWDkNCFtsiQNkKKgRQVYLGAYDTEEAAARAYDLAALKYWG 70
                      56889*************5444666335446*************************98 PP
2AP256.37.7e-18113165156
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       s+y+GV +++ +grW+A+I  +     +k+ +lg+f+t eeAa+a++ a+ +++g+
  TRIDC5BG025010.5 113 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFDTQEEAARAYDLAAIEYRGA 165
                       89****99**********988422...5*************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
PTLACMSKLH PCQYVLRHRW TGRFEAHLWD KNCFTSIQNK KKGRQVYLGA YDTEEAAARA  60
YDLAALKYWG PETTLNFTVD EYAKERSEME AVSREEYLAA LRRRSSGFSR GVSKYRGVAR  120
HHHNGRWEAR IGRVLGNKYL YLGTFDTQEE AARAYDLAAI EYRGANAVTN FDISRYLDQP  180
QLLAQMEQGP QVVPALQEEL QHDQQSDNAV QELNSGEAQK PGSVNEPIAV DDTDSAGDIG  240
APLVFDSGVE ENLWSPCMDY DLDPIFGRDI SNSMNLSEFF NDPTFESNIG YLFEGCPDID  300
DCSTRHGAGL AALGFLKEG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-70AP2 family protein