PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5BG018910.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 237aa MW: 26230.7 Da PI: 7.7916 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2e-06 | 1 | 17 | 10 | 26 |
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 +r G Ck+ +C+F+H+ TRIDC5BG018910.7 1 MRIGSCKFATNCRFHHP 17 899*************9 PP | |||||||
2 | zf-CCCH | 22.2 | 2.5e-07 | 140 | 166 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ ++Ck++H++ TRIDC5BG018910.7 140 PGQPECQHFVKSGFCKFKAKCKYHHPR 166 5789*********************96 PP | |||||||
3 | zf-CCCH | 27.7 | 4.7e-09 | 187 | 212 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ TRIDC5BG018910.7 187 DQPVCTYYERYGVCKFGPACMYNHPF 212 6899********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MRIGSCKFAT NCRFHHPDPT NVVSRDPMLE HENGDIPQQN VQASSQLNVP VWPADQRALN 60 EHCAPFLAPA SSYSAGMIPP RGMYPSPEWS GYHQVPLGPY YPPGISFHHF PAPPVNHPMY 120 RGADVPGHQE LPSDEYPERP GQPECQHFVK SGFCKFKAKC KYHHPRSLVP PPTAGALSPL 180 GLPLRPDQPV CTYYERYGVC KFGPACMYNH PFNFGHPVSA AGPPLSAQYL TSGNYTV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 2e-41 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5BG018910.7 |