PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG006630.9

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 674aa MW: 74957.1 Da PI: 7.1537

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG006630.9	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.1	1.7e-23	44	144	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ TRIDC5BG006630.9 44 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WN 133 99****************************9999996.9**********************************************..67 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 ++ +l+++++ TRIDC5BG006630.9 134 DNNQLLLGIRH 144 67777888876 PP
2	Auxin_resp	117.8	9e-39	170	253	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k TRIDC5BG006630.9 170 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 253 79*******************************9789****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
MHADAETDEV YAQMTLQPLS PEEQKEPFLP IELGAASKQP TNYFCKTLTA SDTSTHGGFS 60 VPRRSAEKVF PPLDFSLQPP CQELIAKDLH DNEWKFRHIF RGQPKRHLLT TGWSVFVSAK 120 RLVAGDSVIF IWNDNNQLLL GIRHANRPQT IMPSSVLSSD SMHIGLLAAA AHAAATNSRF 180 TIFYNPRASP SEFIIPLAKY VKSVYHTRVS VGMRFRMLFE TEESSVRRYM GTITTISDLD 240 SVRWPNSHWR SVKVGWDEST AGEKQPRVSL WEIEPLTTFP MYPTAFPLRL KRPWASGLPS 300 MHGVKNDDFA RYSSLMWLGD GDRGAQSLNF QGVGASPWLQ PRIDSPLLGL KPDTYQQMAA 360 AALEEIRTGD PSKQSSALLQ FQQTQNPNGG LNSVYANHVL QQMQYQAQQS SLQTVQHGHC 420 QYSGNPGFLQ SQFEQLHLHN PPAPPQQGYQ VIQQSHQEMQ QQLSSGCRRI SDVDSSMPGS 480 ESASQSQSSF YQQNLLEGNN DPSLHLHNGF RNFSSQDSSN LVSLPRTDQL MAPEGWPSKR 540 LAVEPLGHIE SRSMQPKHEN INHQSNMSHF AGTLAPQSAR DSSSVQDGMA GARGGSSSRT 600 VSMAIPLLRY SGEDLPPADT LATSSCLGES GTFNSLDNMC GVNPSQDGTF VKVCVFYLCI 660 MFFKFFNAHS SKWI

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

MHADAETDEV YAQMTLQPLS PEEQKEPFLP IELGAASKQP TNYFCKTLTA SDTSTHGGFS  60
VPRRSAEKVF PPLDFSLQPP CQELIAKDLH DNEWKFRHIF RGQPKRHLLT TGWSVFVSAK  120
RLVAGDSVIF IWNDNNQLLL GIRHANRPQT IMPSSVLSSD SMHIGLLAAA AHAAATNSRF  180
TIFYNPRASP SEFIIPLAKY VKSVYHTRVS VGMRFRMLFE TEESSVRRYM GTITTISDLD  240
SVRWPNSHWR SVKVGWDEST AGEKQPRVSL WEIEPLTTFP MYPTAFPLRL KRPWASGLPS  300
MHGVKNDDFA RYSSLMWLGD GDRGAQSLNF QGVGASPWLQ PRIDSPLLGL KPDTYQQMAA  360
AALEEIRTGD PSKQSSALLQ FQQTQNPNGG LNSVYANHVL QQMQYQAQQS SLQTVQHGHC  420
QYSGNPGFLQ SQFEQLHLHN PPAPPQQGYQ VIQQSHQEMQ QQLSSGCRRI SDVDSSMPGS  480
ESASQSQSSF YQQNLLEGNN DPSLHLHNGF RNFSSQDSSN LVSLPRTDQL MAPEGWPSKR  540
LAVEPLGHIE SRSMQPKHEN INHQSNMSHF AGTLAPQSAR DSSSVQDGMA GARGGSSSRT  600
VSMAIPLLRY SGEDLPPADT LATSSCLGES GTFNSLDNMC GVNPSQDGTF VKVCVFYLCI  660
MFFKFFNAHS SKWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.2	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG006630.9