PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5BG006630.6
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 804aa    MW: 88862.2 Da    PI: 6.2773
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5BG006630.6genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.2e-2344144198
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  TRIDC5BG006630.6  44 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WN 133
                       99******************************9999996.9************************************************..67 PP

                       SEE..EEEEE- CS
                B3  88 sefelvvkvfr 98 
                       ++ +l+++++ 
  TRIDC5BG006630.6 134 DNNQLLLGIRH 144
                       67777888876 PP
2Auxin_resp117.51.1e-38170253183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k
  TRIDC5BG006630.6 170 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 253
                       79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    
MHADAETDEV YAQMTLQPLS PEEQKEPFLP IELGAASKQP TNYFCKTLTA SDTSTHGGFS  60
VPRRSAEKVF PPLDFSLQPP CQELIAKDLH DNEWKFRHIF RGQPKRHLLT TGWSVFVSAK  120
RLVAGDSVIF IWNDNNQLLL GIRHANRPQT IMPSSVLSSD SMHIGLLAAA AHAAATNSRF  180
TIFYNPRASP SEFIIPLAKY VKSVYHTRVS VGMRFRMLFE TEESSVRRYM GTITTISDLD  240
SVRWPNSHWR SVKVGWDEST AGEKQPRVSL WEIEPLTTFP MYPTAFPLRL KRPWASGLPS  300
MHGMFNGVKN DDFARYSSLM WLGDGDRGAQ SLNFQGVGAS PWLQPRIDSP LLGLKPDTYQ  360
QMAAAALEEI RTGDPSKQSS ALLQFQQTQN PNGGLNSVYA NHVLQQMQYQ AQQSSLQTVQ  420
HGHCQYSGNP GFLQSQFEQL HLHNPPAPPQ QGYQVIQQSH QEMQQQLSSG CRRISDVDSS  480
MPGSESASQS QSSFYQQNLL EGNNDPSLHL HNGFRNFSSQ DSSNLVSLPR TDQLMAPEGW  540
PSKRLAVEPL GHIESRSMQP KHENINHQSN MSHFAGTLAP QSARDSSSVQ AYGANADNQF  600
LSSTFAFQDG MAGARGGSSS RTVSMAIPLL RYSGEDLPPA DTLATSSCLG ESGTFNSLDN  660
MCGVNPSQDG TFVKVYKSGS PGRSLDITKF SSYYELRSEL EHLFGLEGQL EDPVRSGWQL  720
VFVDRENDIL LVGDDPWQEF VNSVGCIKIL SQQEVQQMVR GGEGLVSSAP GARMAQGNVC  780
DGYSGGHDLQ NLTGNMASVP PLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein