PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5BG006630.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 843aa MW: 93595.7 Da PI: 6.2308 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.6 | 2.3e-23 | 131 | 231 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ TRIDC5BG006630.4 131 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WN 220 99******************************9999996.9************************************************..67 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 ++ +l+++++ TRIDC5BG006630.4 221 DNNQLLLGIRH 231 67777888875 PP | |||||||
2 | Auxin_resp | 117.4 | 1.2e-38 | 257 | 340 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k TRIDC5BG006630.4 257 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 340 79*********************************9789******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence |
MERKLSMSEM PQSLPENDGE QRCLNSELWH ACAGPLVSLP AVGSRVIYFP QGHSEQVAAS 60 TNKEVDAQIP NYPNLPPQLI CQLHNVTMHA DAETDEVYAQ MTLQPLSPEE QKEPFLPIEL 120 GAASKQPTNY FCKTLTASDT STHGGFSVPR RSAEKVFPPL DFSLQPPCQE LIAKDLHDNE 180 WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVIFIWN DNNQLLLGIR HANRPQTIMP 240 SSVLSSDSMH IGLLAAAAHA AATNSRFTIF YNPRASPSEF IIPLAKYVKS VYHTRVSVGM 300 RFRMLFETEE SSVRRYMGTI TTISDLDSVR WPNSHWRSVK VGWDESTAGE KQPRVSLWEI 360 EPLTTFPMYP TAFPLRLKRP WASGLPSMHG MFNGVKNDDF ARYSSLMWLG DGDRGAQSLN 420 FQGVGASPWL QPRIDSPLLG LKPDTYQQMA AAALEEIRTG DPSKQSSALL QFQQTQNPNG 480 GLNSVYANHV LQQMQYQAQQ SSLQTVQHGH CQYSGNPGFL QSQFEQLHLH NPPAPPQQGY 540 QVIQQSHQEM QQQLSSGCRR ISDVDSSMPG SESASQSQSS FYQQNLLEGN NDPSLHLHNG 600 FRNFSSQDSS NLVSLPRTDQ LMAPEGWPSK RLAVEPLGHI ESRSMQPKHE NINHQSNMSH 660 FAGTLAPQSA RDSSSVQAYG ANADNQFLSS TFAFQDGMAG ARGGSSSRTV SMAIPLLRYS 720 GEDLPPADTL ATSSCLGESG TFNSLDNMCG VNPSQDGTFV KVYKSGSPGR SLDITKFSSY 780 YELRSELEHL FGLEGQLEDP VRSGWQLVFV DRENDILLVG DDPWQEFVNS VGCIKILSQQ 840 EVQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5BG006630.4 |