PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5BG006630.17
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 375aa    MW: 42056 Da    PI: 8.4712
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5BG006630.17genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.4e-2476176198
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +
  TRIDC5BG006630.17  76 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--W 164
                        99******************************9999996.9************************************************..6 PP

                        SSEE..EEEEE- CS
                 B3  87 rsefelvvkvfr 98 
                        +++ +l+++++ 
  TRIDC5BG006630.17 165 NDNNQLLLGIRH 176
                        767777888876 PP
2Auxin_resp119.13.6e-39202285183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k
  TRIDC5BG006630.17 202 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 285
                        79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    
SVAASTNKEV DAQIPNYPNL PPQLICQLHN VTMHADAETD EVYAQMTLQP LSPEEQKEPF  60
LPIELGAASK QPTNYFCKTL TASDTSTHGG FSVPRRSAEK VFPPLDFSLQ PPCQELIAKD  120
LHDNEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV IFIWNDNNQL LLGIRHANRP  180
QTIMPSSVLS SDSMHIGLLA AAAHAAATNS RFTIFYNPRA SPSEFIIPLA KYVKSVYHTR  240
VSVGMRFRML FETEESSVRR YMGTITTISD LDSVRWPNSH WRSVKVGWDE STAGEKQPRV  300
SLWEIEPLTT FPMYPTAFPL RLKRPWASGL PSMHGMFNAL MWLGDGDRGA QSLNFQGVGA  360
SPWLQPRIDS PLLGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein