PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5BG006630.15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 423aa MW: 47525.1 Da PI: 8.1658 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.1 | 7.9e-24 | 120 | 220 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F + TRIDC5BG006630.15 120 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--W 208 99******************************9999996.9************************************************..6 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++ +l+++++ TRIDC5BG006630.15 209 NDNNQLLLGIRH 220 767777888876 PP | |||||||
2 | Auxin_resp | 118.8 | 4.4e-39 | 246 | 329 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k TRIDC5BG006630.15 246 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 329 79*********************************9789******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence |
MCAWHFSGEQ RCLNSELWHA CAGPLVSLPA VGSRVIYFPQ GHSEQVAAST NKEVDAQIPN 60 YPNLPPQLIC QLHNVTMHAD AETDEVYAQM TLQPLSPEEQ KEPFLPIELG AASKQPTNYF 120 CKTLTASDTS THGGFSVPRR SAEKVFPPLD FSLQPPCQEL IAKDLHDNEW KFRHIFRGQP 180 KRHLLTTGWS VFVSAKRLVA GDSVIFIWND NNQLLLGIRH ANRPQTIMPS SVLSSDSMHI 240 GLLAAAAHAA ATNSRFTIFY NPRASPSEFI IPLAKYVKSV YHTRVSVGMR FRMLFETEES 300 SVRRYMGTIT TISDLDSVRW PNSHWRSVKV GWDESTAGEK QPRVSLWEIE PLTTFPMYPT 360 AFPLRLKRPW ASGLPSMHGM FNGVKNDDFA RYSSLMWLGD GDRGAQSLNF QGVGASPWLQ 420 PRI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5BG006630.15 |