PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG006630.13

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 571aa MW: 64094.5 Da PI: 7.7988

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG006630.13	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.4	1.3e-23	132	232	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F + TRIDC5BG006630.13 132 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--W 220 99****************************9999996.9**********************************************..6 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++ +l+++++ TRIDC5BG006630.13 221 NDNNQLLLGIRH 232 767777888876 PP
2	Auxin_resp	118.1	7.1e-39	258	341	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k TRIDC5BG006630.13 258 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 341 79*******************************9789****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence
WHYCHSLCLL PVATSCLCPR EQRCLNSELW HACAGPLVSL PAVGSRVIYF PQGHSEQVAA 60 STNKEVDAQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLSPE EQKEPFLPIE 120 LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRSAEKVFPP LDFSLQPPCQ ELIAKDLHDN 180 EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RHANRPQTIM 240 PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FIIPLAKYVK SVYHTRVSVG 300 MRFRMLFETE ESSVRRYMGT ITTISDLDSV RWPNSHWRSV KVGWDESTAG EKQPRVSLWE 360 IEPLTTFPMY PTAFPLRLKR PWASGLPSMH GVKNDDFARY SSLMWLGDGD RGAQSLNFQG 420 VGASPWLQPR IDSPLLGLKP DTYQQMAAAA LEEIRTGDPS KQSSALLQFQ QTQNPNGGLN 480 SVYANHVLQQ MQYQAQQSSL QTVQHGHCQY SGNPGFLQSQ FEQLHLHNPP APPQQGYQVI 540 QQSHQEMQQQ LSSGCRRISD VDSTESLRRK Q

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence

WHYCHSLCLL PVATSCLCPR EQRCLNSELW HACAGPLVSL PAVGSRVIYF PQGHSEQVAA  60
STNKEVDAQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLSPE EQKEPFLPIE  120
LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRSAEKVFPP LDFSLQPPCQ ELIAKDLHDN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RHANRPQTIM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FIIPLAKYVK SVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITTISDLDSV RWPNSHWRSV KVGWDESTAG EKQPRVSLWE  360
IEPLTTFPMY PTAFPLRLKR PWASGLPSMH GVKNDDFARY SSLMWLGDGD RGAQSLNFQG  420
VGASPWLQPR IDSPLLGLKP DTYQQMAAAA LEEIRTGDPS KQSSALLQFQ QTQNPNGGLN  480
SVYANHVLQQ MQYQAQQSSL QTVQHGHCQY SGNPGFLQSQ FEQLHLHNPP APPQQGYQVI  540
QQSHQEMQQQ LSSGCRRISD VDSTESLRRK Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG006630.13