PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG006630.11

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 684aa MW: 76470.2 Da PI: 7.1304

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG006630.11	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74	1.7e-23	137	237	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F + TRIDC5BG006630.11 137 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--W 225 99****************************9999996.9**********************************************..6 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++ +l+++++ TRIDC5BG006630.11 226 NDNNQLLLGIRH 237 767777888876 PP
2	Auxin_resp	117.8	9.2e-39	263	346	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k TRIDC5BG006630.11 263 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 346 79*******************************9789****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
ILLMLWHYCH SLCLLPVATS CLCPREQRCL NSELWHACAG PLVSLPAVGS RVIYFPQGHS 60 EQVAASTNKE VDAQIPNYPN LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSPEEQKEP 120 FLPIELGAAS KQPTNYFCKT LTASDTSTHG GFSVPRRSAE KVFPPLDFSL QPPCQELIAK 180 DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNDNNQ LLLGIRHANR 240 PQTIMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFIIPL AKYVKSVYHT 300 RVSVGMRFRM LFETEESSVR RYMGTITTIS DLDSVRWPNS HWRSVKVGWD ESTAGEKQPR 360 VSLWEIEPLT TFPMYPTAFP LRLKRPWASG LPSMHGMFNA LMWLGDGDRG AQSLNFQGVG 420 ASPWLQPRID SPLLGLKPDT YQQMAAAALE EIRTGDPSKQ SSALLQFQQT QNPNGGLNSV 480 YANHVLQQMQ YQAQQSSLQT VQHGHCQYSG NPGFLQSQFE QLHLHNPPAP PQQGYQVIQQ 540 SHQEMQQQLS SGCRRISDVD SSMPGSESAS QSQSSFYQQN LLEGNNDPSL HLHNGFRNFS 600 SQDSSNLVSL PRTDQLMAPE GWPSKRLAVE PLGHIESRSM QPKHENINHQ SNMSHFAGTL 660 APQSARDSSS VQQNCFYGHT FVEV

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

ILLMLWHYCH SLCLLPVATS CLCPREQRCL NSELWHACAG PLVSLPAVGS RVIYFPQGHS  60
EQVAASTNKE VDAQIPNYPN LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSPEEQKEP  120
FLPIELGAAS KQPTNYFCKT LTASDTSTHG GFSVPRRSAE KVFPPLDFSL QPPCQELIAK  180
DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNDNNQ LLLGIRHANR  240
PQTIMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFIIPL AKYVKSVYHT  300
RVSVGMRFRM LFETEESSVR RYMGTITTIS DLDSVRWPNS HWRSVKVGWD ESTAGEKQPR  360
VSLWEIEPLT TFPMYPTAFP LRLKRPWASG LPSMHGMFNA LMWLGDGDRG AQSLNFQGVG  420
ASPWLQPRID SPLLGLKPDT YQQMAAAALE EIRTGDPSKQ SSALLQFQQT QNPNGGLNSV  480
YANHVLQQMQ YQAQQSSLQT VQHGHCQYSG NPGFLQSQFE QLHLHNPPAP PQQGYQVIQQ  540
SHQEMQQQLS SGCRRISDVD SSMPGSESAS QSQSSFYQQN LLEGNNDPSL HLHNGFRNFS  600
SQDSSNLVSL PRTDQLMAPE GWPSKRLAVE PLGHIESRSM QPKHENINHQ SNMSHFAGTL  660
APQSARDSSS VQQNCFYGHT FVEV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG006630.11