PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5BG006630.10
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 895aa    MW: 98949 Da    PI: 6.396
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5BG006630.10genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.5e-23139239198
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +
  TRIDC5BG006630.10 139 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--W 227
                        99******************************9999996.9************************************************..6 PP

                        SSEE..EEEEE- CS
                 B3  87 rsefelvvkvfr 98 
                        +++ +l+++++ 
  TRIDC5BG006630.10 228 NDNNQLLLGIRH 239
                        767777888875 PP
2Auxin_resp117.31.3e-38265348183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k
  TRIDC5BG006630.10 265 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 348
                        79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    
SFILLMLWHY CHSLCLLPVA TSCLCPREQR CLNSELWHAC AGPLVSLPAV GSRVIYFPQG  60
HSEQVAASTN KEVDAQIPNY PNLPPQLICQ LHNVTMHADA ETDEVYAQMT LQPLSPEEQK  120
EPFLPIELGA ASKQPTNYFC KTLTASDTST HGGFSVPRRS AEKVFPPLDF SLQPPCQELI  180
AKDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVIFIWNDN NQLLLGIRHA  240
NRPQTIMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFII PLAKYVKSVY  300
HTRVSVGMRF RMLFETEESS VRRYMGTITT ISDLDSVRWP NSHWRSVKVG WDESTAGEKQ  360
PRVSLWEIEP LTTFPMYPTA FPLRLKRPWA SGLPSMHGVK NDDFARYSSL MWLGDGDRGA  420
QSLNFQGVGA SPWLQPRIDS PLLGLKPDTY QQMAAAALEE IRTGDPSKQS SALLQFQQTQ  480
NPNGGLNSVY ANHVLQQMQY QAQQSSLQTV QHGHCQYSGN PGFLQSQFEQ LHLHNPPAPP  540
QQGYQVIQQS HQEMQQQLSS GCRRISDVDS SMPGSESASQ SQSSFYQQNL LEGNNDPSLH  600
LHNGFRNFSS QDSSNLVSLP RTDQLMAPEG WPSKRLAVEP LGHIESRSMQ PKHENINHQS  660
NMSHFAGTLA PQSARDSSSV QAYGANADNQ FLSSTFAFQD GMAGARGGSS SRTVSMAIPL  720
LRYSGEDLPP ADTLATSSCL GESGTFNSLD NMCGVNPSQD GTFVKVYKSG SPGRSLDITK  780
FSSYYELRSE LEHLFGLEGQ LEDPVRSGWQ LVFVDRENDI LLVGDDPWQE FVNSVGCIKI  840
LSQQEVQQMV RGGEGLVSSA PGARMAQGNV CDGYSGGHDL QNLTGNMASV PPLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein