PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5BG003960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | YABBY | ||||||||
Protein Properties | Length: 207aa MW: 22701.6 Da PI: 9.0793 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 228 | 2.4e-70 | 9 | 180 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkee......lleelkveeenlksnv..eke 89 +e+vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsv+l+ +++ ++ +++es + +++++ ++s + +++ TRIDC5BG003960.1 9 PAEEVCYVHCNFCNTVLAVSVPGNSMLNIVTVRCGHCTNLLSVSLRGQMHSpVPPAAQVQESSLSKpngsngF---IRDHGSVYNSPEfgSSS 98 6899*****************************************9877542555666777766553453332...34444444443311333 PP YABBY 90 esastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s+s++ ++ ++ + ++++ + + rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl TRIDC5BG003960.1 99 SSSSSKFRMPTMMFSPQNDLLQEQTlHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 180 4444445555555555555555444479****************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MSSSGQITPA EEVCYVHCNF CNTVLAVSVP GNSMLNIVTV RCGHCTNLLS VSLRGQMHSP 60 VPPAAQVQES SLSKPNGSNG FIRDHGSVYN SPEFGSSSSS SSSKFRMPTM MFSPQNDLLQ 120 EQTLHARPPE KRQRVPSAYN RFIKEEIRRI KANNPDISHR EAFSTAAKNW AHYPNIHFGL 180 NPERDGGKRL AVDDAAPAAK KIQGFCS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.1 | 5e-59 | YABBY family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5BG003960.1 |