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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC5BG000790.6 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 1130aa MW: 124757 Da PI: 9.0444 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 23.7 | 1.1e-07 | 10 | 45 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
W+++E e+++ a +++G++ W+++a + Rt ++
TRIDC5BG000790.6 10 QWSKDELERFYAAYRKYGKD-WRKVAGAVH-DRTSDMV 45
6*****************99.******999.9997665 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1130 aa Download sequence |
KKKLSDLGSQ WSKDELERFY AAYRKYGKDW RKVAGAVHDR TSDMVEALYN MNRAYLSLPE 60 GTATAAGLIA MMTDHYNILD GSNSDHESNG SPKTSRKPQK RGRAKLQSVS KASDTRYPDL 120 LQSQPASSSY GCLSLLKKKR SGGNKPRAVG KRTPRVPVAS MYHRDDKAGP SNRQAKPDAN 180 NGDEEGALAA LALAEVCQRG SPQVSQTSGR SSGQLFLSPG KSIDRKNADS EMGSSKMHGF 240 QVDTDYPEGS LGSREAETAD YPKDASYFLN NEGSASGKSK PKVKRSQKRR KKAAHKTDDQ 300 FEDDREACSG TEEGCSSRKA KDISELDVFG SKGSWPSNKS NKRSRQLFFG DELSALDALH 360 TLADISVNIL QPSSIAESES SAQFKDGSKD NESDDKPSVP AAVSLFDKKD KPRKTKKIKR 420 QSEIASNEVV TRKKARLSKD HHHDGSTSEV KQDDCKCGVK MEKKKRKSST LKISKDEKNT 480 LKDSEKTEAS AEEGKVSSNK GRHAHVSPVS KQNKSKAQES SPAHADFGKE AMDAVDTTEN 540 AITQQSDSAS KSKSRRKLGI LKALAPESKP AEGADDSCDN VSYPVNNAIE LKDKLSHCLS 600 SRFLRRWCMS EWFYSAIDYP WFAKSEFVEY LNHVKLGHVP RLTRVEWGVI RSSLGKPRRL 660 SKQFLQEERE KLSQYRESVR QHYAELQSGV REGLPTDLAR PLAVGQRVIA CHPKTRELHD 720 GSVLTVDRNR CRVQFDRPEL GVEFVMDIDC MPLHPLENFP ESLRRQNIVN KYYSSFSEVK 780 FEDRSKEYGG GGAPRFIPNG DAFDSTAQAK TTANEATVAA HQAMYGQPCT LSQIQEREAD 840 IRALAELSRA LDKKEALLVE LRHMNEEVSG KQKDGEIIRD LEHFRKQYAM VLVQLRDSND 900 HVASALLCLR QRNTFHGQPT QSYPNKSTEN GGAFNRTPDP SSNLFGYINQ ESGSQVMEII 960 ETSRSKAKTM VDVAVQAMCK VSEGENAFAK IGEALDNLNL RGTGSGSSIL GIRRIPPDSG 1020 QANSDNCAAG RFDPAAAANN ISSPRVLPNG SDSDAQFPSE LISSCVATIL MIQNCTEKQY 1080 HPAEVAHILD SALSRLQPCS SQNVPIFREI EMCMGIIKNQ MLALIPTPSG |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 280 | 292 | KPKVKRSQKRRKK |
| 2 | 283 | 289 | VKRSQKR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G21430.2 | 0.0 | MYB_related family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC5BG000790.6 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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