PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG070830.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

RAV

Protein Properties

Length: 348aa MW: 38160.4 Da PI: 7.7913

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG070830.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.5	1.4e-12	82	130	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ + r++lg+f +e Aa+a++ a+++++g TRIDC5AG070830.2 82 SRFKGVVPQP-NGRWGAQIYEK-----HSRVWLGTFADEESAARAYDVAALRFRG 130 689*9788.8*****3.....5***********************98 PP
2	B3	94.8	5.9e-30	201	293	1	85
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ tpsdv+k++rlv+pk++ae+h g++ ++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD+v+F+++ TRIDC5AG070830.2 201 FEKAVTPSDVGKLNRLVVPKQHAEKHfppttaaaTGSNGKGLLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLVAGDTVTFSRS 293 89**************************999955667899**********************************************943 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
NEHHTICPTE MASFHHLFLT IPRSRHKSRH LRNGHSACQL SPPMASGKPT NPEIDNDMEC 60 SSPESGAEDA VESSSPAPAP SSRFKGVVPQ PNGRWGAQIY EKHSRVWLGT FADEESAARA 120 YDVAALRFRG RDAVTNYQLP LAVEGASSSS TSELAFLADH SKAEIVDMLR KHTYADELRQ 180 GLRRGHGRAQ PTPAWAREFL FEKAVTPSDV GKLNRLVVPK QHAEKHFPPT TAAATGSNGK 240 GLLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLVAGDTVTF SRSAYVMNDT 300 EEQLFIDYKQ KNKNDEAADA AKNEAGHAAV KLFGVDIGGG EMAGSSGG

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

NEHHTICPTE MASFHHLFLT IPRSRHKSRH LRNGHSACQL SPPMASGKPT NPEIDNDMEC  60
SSPESGAEDA VESSSPAPAP SSRFKGVVPQ PNGRWGAQIY EKHSRVWLGT FADEESAARA  120
YDVAALRFRG RDAVTNYQLP LAVEGASSSS TSELAFLADH SKAEIVDMLR KHTYADELRQ  180
GLRRGHGRAQ PTPAWAREFL FEKAVTPSDV GKLNRLVVPK QHAEKHFPPT TAAATGSNGK  240
GLLLNFEDGE GKVWRFRYSY WNSSQSYVLT KGWSRFVREK GLVAGDTVTF SRSAYVMNDT  300
EEQLFIDYKQ KNKNDEAADA AKNEAGHAAV KLFGVDIGGG EMAGSSGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-100	RAV family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG070830.2