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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC5AG064710.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | MYB | ||||||||
| Protein Properties | Length: 1026aa MW: 114477 Da PI: 4.815 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 43 | 1e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l
TRIDC5AG064710.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
78*****************************.************986 PP
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| 2 | Myb_DNA-binding | 32.7 | 1.7e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l
TRIDC5AG064710.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
68*****************99.********8..**********9986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1026 aa Download sequence |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRHK KRKRKGIDYN AEIPFEKRPP PGFYDTVGED RPLEHVQFPT 240 TIEELEGRRR VDVEAQLRKQ DIAKNKILQR QDAPAAIMQA NKLNDPEAVT RRSKLMLPPP 300 QISDIELEEI AKMGNAGDPA LAEELGEGST AARTLLANYS QTPRLGMTPL RTPQRTPGGK 360 GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR KKEMQTPNPM ATPLASPGPG 420 VTPRIGMTPS RDGNSFGLTP KGTPFRDELH INEEVEMQDS AQLELRRQAE LRKGLRSGFA 480 SIPQPKNEYQ IVMPPITEEN EESEEKIEED MSDRLARERA EEQARQEALL RKRSKVLQRS 540 LPRPPAASVE ILRQSLIKGG ESRSTFVPPT SLEQAVELIN EELLRLLEHD NAKYPLDEQI 600 QRDKKKGSKR QANTAAFVPE IEGFDEHELK EASSMVEEEI QYLRVAMGHE NESFEDFVKS 660 HDACQEDLMF FPTNNSYGLA SVAGNADKIS ALQHEFEMVK KRMDDEAKKA SRLEQKIKLL 720 TQGYQARAAK LGSQIQDTFK QMNTAATELE CFQELQKQEQ MAGAYRVRNL AEEVNKQKAL 780 EQTLQSRYGD LLSGYQSIQG QLEEHKRLLN LQKEAIEAEN RAKEEEAAAQ NRAKEEEAAA 840 QSRAKEEAAA QNRAKEEEAA ALNCGKVEEA SAQDGAAEEE NERKNHGIEE ESGQTRVANE 900 EAAGSKEIIG DQMDVDNADA AGELVGPIPP LPDAQVDNDG ASVEQSTSNA KSGENVAMNE 960 GAVDKVDSSK LDGQDNTNGS MDVDAGSQEE GNNVPAAPDA TIVDVGNTPV SSDQAVSNEE 1020 SDVVPE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 164 | 203 | KKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHKKRK |
| 2 | 186 | 205 | KRRELKAAGIDNRHKKRKRK |
| 3 | 200 | 205 | KKRKRK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G09770.1 | 0.0 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC5AG064710.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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