PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5AG054980.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 839aa MW: 91301.9 Da PI: 6.3324 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4e-18 | 13 | 70 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+++Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ TRIDC5AG054980.2 13 YVRYTPEQVDALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 70 6789****************************************************97 PP | |||||||
2 | START | 175.1 | 4.2e-55 | 162 | 369 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +++l+ i +g g+++ TRIDC5AG054980.2 162 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIVAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLQIIPTGngGTIE 253 68999*****************************************************.8888888888************************ PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l++++++a+++l++ Rdf+++Ry+ l++g+++i+++S+++ + p+ ++++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++l TRIDC5AG054980.2 254 LIYMQTYAPTTLAApRDFWILRYTSGLEDGSLAICERSLTQATGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVL 346 ************999*****************************999999******************************************* PP HHHHHHHHHHHHHHHHHHTXXXX CS START 182 rslvksglaegaktwvatlqrqc 204 r+l++s + ++k++ a+l++ + TRIDC5AG054980.2 347 RPLYESPKILAQKMTIAALRHIR 369 ******************99865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 839 aa Download sequence |
GGSGAPQVDT GKYVRYTPEQ VDALERVYSE CPKPSSLRRQ QLIRECPILS NIEPKQIKVW 60 FQNRRCREKQ RKEASRLQTV NRKLSAMNKL LMEENDRLQK QVSRLVYENG YMRTHLNNPS 120 VATTDTSCES VVTSGQHQQQ QQNAVVPRPQ RDANNPAGLL AIAEETLAEF LSKATGTAVD 180 WVQMVGMKPG PDSIGIVAVS HNCSGVAARA CGLVSLEPTK VAEILKDRPS WYRDCRCVDV 240 LQIIPTGNGG TIELIYMQTY APTTLAAPRD FWILRYTSGL EDGSLAICER SLTQATGGPS 300 GPNTPNFVRA EVLPSGYLIR PCEGGGSMIH IVDHVDLDAW SVPEVLRPLY ESPKILAQKM 360 TIAALRHIRQ IAHESSGEMP YGGGRQPAVL RTFSQRLSRG FNDAVNGFLD DGWSLMSSDG 420 AEDVTIAINS SPNKLAGSHV NPSQMFTAIG GGVLCAKASM LLQNVPPALL VRFLREHRSE 480 WADPGVDAYS AAALRASPYA VPGLRASGFM GSQVILPLAH TLEHEEFLEV IRLEGHSLCH 540 DEVVLSRDMY LLQLCSGVDE NAAGACAQLV FAPIDESFAD DAPLLPSGFR VIPLDAKTDA 600 PSATRTLDLA STLEVGPGGT RAPSDASSTS NTRSVLTIAF QFSYENHLRE SVAAMARQYV 660 RTVVASVQRV AMAIAPSRPG GQLEMKNPPG SPEAHTLARW IGRSYRFHTG AELLCTESQS 720 ADASLKALWQ HSDSIMCCSL KAAPVFTFAN QAGLDMLETT LIALQDISLE KILDDDGRKA 780 LCSEFPKIMQ QGFAYLPGGV CVSSMGRPVS YEQAVAWKVL GDDDAPHCLA FMFVNWSFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5AG054980.2 |