PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5AG046620.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 455aa MW: 49779.5 Da PI: 4.985 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.4 | 9e-22 | 32 | 87 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k TRIDC5AG046620.9 32 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 87 688999***********************************************999 PP | |||||||
2 | START | 153.1 | 2.4e-48 | 244 | 454 | 4 | 190 |
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 ++a++elvk ++++p+W s e +n de+++ f++ + + +ea r++g+ + ++++lv++l++ + +W+e+++ +a+t+e TRIDC5AG046620.9 244 LAAMEELVKVTQVDDPLWQPSLdiglETLNFDEYRRAFARVLGpspagYVSEATREVGIAIINSVDLVNSLMNEA-RWSEMFPcvvaRASTME 335 789*******************9***************88666********************************.***************** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskv 164 issg g +qlm aelq+lsplvp R+++f+R+++q+ +g wvivdvSvd p + ++++ ++llpSg+++e+++ng+ kv TRIDC5AG046620.9 336 IISSGmggtrsGSIQLMRAELQVLSPLVPiREVTFLRFCKQHADGLWVIVDVSVDGVLRPDSgtgagPAGYMGCRLLPSGCIVEDMQNGYAKV 428 *******************************************************99888877778789************************ PP EEEE-EE--SSXXHHHHHHHHHHHHH CS START 165 twvehvdlkgrlphwllrslvksgla 190 twv h++++++ +h+l+r+l++sg+a TRIDC5AG046620.9 429 TWVVHAEYDEAAVHELYRPLLRSGQA 454 **********************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence |
EDENDSRSGS DNLDGASADE LDPDNSNPRK KKKRYHRHTP QQIQELEAVF KECPHPDEKQ 60 RMELSRRLNL ESRQVKFWFQ NRRTQMKTQI ERHENALLRQ ENDKLRTENM TIREAMRSPT 120 CGNCGGAAVL GEVSLEEQHL RIENSRLKDE LDRVCALAGK FLGRPVSAIS SPLSLPSSLC 180 SGLDLAVGSN NGFMGMGMQS IPDLMGGGSA AMRLPAGIMG GGLDDGLGGE GVAIDRGALL 240 ELGLAAMEEL VKVTQVDDPL WQPSLDIGLE TLNFDEYRRA FARVLGPSPA GYVSEATREV 300 GIAIINSVDL VNSLMNEARW SEMFPCVVAR ASTMEIISSG MGGTRSGSIQ LMRAELQVLS 360 PLVPIREVTF LRFCKQHADG LWVIVDVSVD GVLRPDSGTG AGPAGYMGCR LLPSGCIVED 420 MQNGYAKVTW VVHAEYDEAA VHELYRPLLR SGQAL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 34 | RKKKKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 1e-172 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5AG046620.9 |