PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC5AG046620.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 851aa MW: 90628.4 Da PI: 5.9368 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.3 | 2e-21 | 123 | 178 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k TRIDC5AG046620.7 123 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 178 688999***********************************************999 PP | |||||||
2 | START | 172.6 | 2.5e-54 | 335 | 561 | 4 | 205 |
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 ++a++elvk ++++p+W s e +n de+++ f++ + + +ea r++g+ + ++++lv++l++ ++W+e+++ +a+t+e TRIDC5AG046620.7 335 LAAMEELVKVTQVDDPLWQPSLdiglETLNFDEYRRAFARVLGpspagYVSEATREVGIAIINSVDLVNSLMNEVPRWSEMFPcvvaRASTME 427 789*******************9***************88666************************************************** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskv 164 issg g +qlm aelq+lsplvp R+++f+R+++q+ +g wvivdvSvd p + ++++ ++llpSg+++e+++ng+ kv TRIDC5AG046620.7 428 IISSGmggtrsGSIQLMRAELQVLSPLVPiREVTFLRFCKQHADGLWVIVDVSVDGVLRPDSgtgagPAGYMGCRLLPSGCIVEDMQNGYAKV 520 *******************************************************99888877778789************************ PP EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 twv h++++++ +h+l+r+l++sg+a ga++w+a lqrqce TRIDC5AG046620.7 521 TWVVHAEYDEAAVHELYRPLLRSGQALGARRWLASLQRQCE 561 ****************************************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 851 aa Download sequence |
MSFGGMFDGA GSGVFSYDAG GGGPGMHNPG RLLAPPPIPR PGAGAGGGGF ASSTGLSLGL 60 QTNMEGGGQL GGAFMGSTGS GGDGDSLGRA REDENDSRSG SDNLDGASAD ELDPDNSNPR 120 KKKKRYHRHT PQQIQELEAV FKECPHPDEK QRMELSRRLN LESRQVKFWF QNRRTQMKTQ 180 IERHENALLR QENDKLRTEN MTIREAMRSP TCGNCGGAAV LGEVSLEEQH LRIENSRLKD 240 ELDRVCALAG KFLGRPVSAI SSPLSLPSSL CSGLDLAVGS NNGFMGMGMQ SIPDLMGGGS 300 AAMRLPAGIM GGGLDDGLGG EGVAIDRGAL LELGLAAMEE LVKVTQVDDP LWQPSLDIGL 360 ETLNFDEYRR AFARVLGPSP AGYVSEATRE VGIAIINSVD LVNSLMNEVP RWSEMFPCVV 420 ARASTMEIIS SGMGGTRSGS IQLMRAELQV LSPLVPIREV TFLRFCKQHA DGLWVIVDVS 480 VDGVLRPDSG TGAGPAGYMG CRLLPSGCIV EDMQNGYAKV TWVVHAEYDE AAVHELYRPL 540 LRSGQALGAR RWLASLQRQC EYHAILCSNP HPNHGDRHEP ISPAGRRCML RLAQRMADNF 600 CAGVCATAAQ KWRRLDEWRV EGAGGRDPAG GEDKVRMMAR QSVGAPGEPP GVVLSATTSV 660 RLPGTPPQRV FDYLRDEQRR GEWDILANGE AMQEMDHIAK GQHHGNAVSL LRPNATSGNQ 720 NNMLILQETC TDASGSLVVY APVDVQSMHV VMGGGDSAYV SLLPSGFAIL PDGHTAPAAA 780 TDPSSQGSSP NAHGGSSNNS PGSLVTVAFQ ILVNNLPTAK LTVESVDTVS NLLSCTIQKI 840 KSALQASIIS P |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 120 | 125 | RKKKKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC5AG046620.7 |