PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5AG046620.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 813aa MW: 86982.3 Da PI: 5.9571 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.3 | 1.9e-21 | 86 | 141 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k TRIDC5AG046620.6 86 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 141 688999***********************************************999 PP | |||||||
2 | START | 172.3 | 3e-54 | 298 | 523 | 4 | 205 |
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 ++a++elvk ++++p+W s e +n de+++ f++ + + +ea r++g+ + ++++lv++l++ +W+e+++ +a+t+e TRIDC5AG046620.6 298 LAAMEELVKVTQVDDPLWQPSLdiglETLNFDEYRRAFARVLGpspagYVSEATREVGIAIINSVDLVNSLMNEV-RWSEMFPcvvaRASTME 389 789*******************9***************88666********************************.***************** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskv 164 issg g +qlm aelq+lsplvp R+++f+R+++q+ +g wvivdvSvd p + ++++ ++llpSg+++e+++ng+ kv TRIDC5AG046620.6 390 IISSGmggtrsGSIQLMRAELQVLSPLVPiREVTFLRFCKQHADGLWVIVDVSVDGVLRPDSgtgagPAGYMGCRLLPSGCIVEDMQNGYAKV 482 *******************************************************99888877778789************************ PP EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 twv h++++++ +h+l+r+l++sg+a ga++w+a lqrqce TRIDC5AG046620.6 483 TWVVHAEYDEAAVHELYRPLLRSGQALGARRWLASLQRQCE 523 ****************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 813 aa Download sequence |
IPRPGAGAGG GGFASSTGLS LGLQTNMEGG GQLGGAFMGS TGSGGDGDSL GRAREDENDS 60 RSGSDNLDGA SADELDPDNS NPRKKKKRYH RHTPQQIQEL EAVFKECPHP DEKQRMELSR 120 RLNLESRQVK FWFQNRRTQM KTQIERHENA LLRQENDKLR TENMTIREAM RSPTCGNCGG 180 AAVLGEVSLE EQHLRIENSR LKDELDRVCA LAGKFLGRPV SAISSPLSLP SSLCSGLDLA 240 VGSNNGFMGM GMQSIPDLMG GGSAAMRLPA GIMGGGLDDG LGGEGVAIDR GALLELGLAA 300 MEELVKVTQV DDPLWQPSLD IGLETLNFDE YRRAFARVLG PSPAGYVSEA TREVGIAIIN 360 SVDLVNSLMN EVRWSEMFPC VVARASTMEI ISSGMGGTRS GSIQLMRAEL QVLSPLVPIR 420 EVTFLRFCKQ HADGLWVIVD VSVDGVLRPD SGTGAGPAGY MGCRLLPSGC IVEDMQNGYA 480 KVTWVVHAEY DEAAVHELYR PLLRSGQALG ARRWLASLQR QCEYHAILCS NPHPNHGDRH 540 EPISPAGRRC MLRLAQRMAD NFCAGVCATA AQKWRRLDEW RVEGAGGRDP AGGEDKVRMM 600 ARQSVGAPGE PPGVVLSATT SVRLPGTPPQ RVFDYLRDEQ RRGEWDILAN GEAMQEMDHI 660 AKGQHHGNAV SLLRPNATSG NQNNMLILQE TCTDASGSLV VYAPVDVQSM HVVMGGGDSA 720 YVSLLPSGFA ILPDGHTAPA AATDPSSQGS SPNAHGGSSN NSPGSLVTVA FQILVNNLPT 780 AKLTVESVDT VSNLLSCTIQ KIKSALQASI ISP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 88 | RKKKKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5AG046620.6 |