PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC5AG046620.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 787aa MW: 85187.5 Da PI: 6.0321 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.4 | 1.9e-21 | 79 | 134 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k TRIDC5AG046620.2 79 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 134 688999***********************************************999 PP | |||||||
2 | START | 172.4 | 2.9e-54 | 291 | 516 | 4 | 205 |
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 ++a++elvk ++++p+W s e +n de+++ f++ + + +ea r++g+ + ++++lv++l++ +W+e+++ +a+t+e TRIDC5AG046620.2 291 LAAMEELVKVTQVDDPLWQPSLdiglETLNFDEYRRAFARVLGpspagYVSEATREVGIAIINSVDLVNSLMNEV-RWSEMFPcvvaRASTME 382 789*******************9***************88666********************************.***************** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskv 164 issg g +qlm aelq+lsplvp R+++f+R+++q+ +g wvivdvSvd p + ++++ ++llpSg+++e+++ng+ kv TRIDC5AG046620.2 383 IISSGmggtrsGSIQLMRAELQVLSPLVPiREVTFLRFCKQHADGLWVIVDVSVDGVLRPDSgtgagPAGYMGCRLLPSGCIVEDMQNGYAKV 475 *******************************************************99888877778789************************ PP EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 twv h++++++ +h+l+r+l++sg+a ga++w+a lqrqce TRIDC5AG046620.2 476 TWVVHAEYDEAAVHELYRPLLRSGQALGARRWLASLQRQCE 516 ****************************************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 787 aa Download sequence |
CYILYYHPAV HALNTTQTNM EGGGQLGGAF MGSTGSGGDG DSLGRAREDE NDSRSGSDNL 60 DGASADELDP DNSNPRKKKK RYHRHTPQQI QELEAVFKEC PHPDEKQRME LSRRLNLESR 120 QVKFWFQNRR TQMKTQIERH ENALLRQEND KLRTENMTIR EAMRSPTCGN CGGAAVLGEV 180 SLEEQHLRIE NSRLKDELDR VCALAGKFLG RPVSAISSPL SLPSSLCSGL DLAVGSNNGF 240 MGMGMQSIPD LMGGGSAAMR LPAGIMGGGL DDGLGGEGVA IDRGALLELG LAAMEELVKV 300 TQVDDPLWQP SLDIGLETLN FDEYRRAFAR VLGPSPAGYV SEATREVGIA IINSVDLVNS 360 LMNEVRWSEM FPCVVARAST MEIISSGMGG TRSGSIQLMR AELQVLSPLV PIREVTFLRF 420 CKQHADGLWV IVDVSVDGVL RPDSGTGAGP AGYMGCRLLP SGCIVEDMQN GYAKVTWVVH 480 AEYDEAAVHE LYRPLLRSGQ ALGARRWLAS LQRQCEYHAI LCSNPHPNHG DRHEPISPAG 540 RRCMLRLAQR MADNFCAGVC ATAAQKWRRL DEWRVEGAGG RDPAGGEDKV RMMARQSVGA 600 PGEPPGVVLS ATTSVRLPGT PPQRVFDYLR DEQRRGEWDI LANGEAMQEM DHIAKGQHHG 660 NAVSLLRPNA TSGNQNNMLI LQETCTDASG SLVVYAPVDV QSMHVVMGGG DSAYVSLLPS 720 GFAILPDGHT APGSSNNSPG SLVTVAFQIL VNNLPTAKLT VESVDTVSNL LSCTIQKIKS 780 ALQCGDR |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 76 | 81 | RKKKKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC5AG046620.2 |