PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5AG043000.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 139aa MW: 16015.5 Da PI: 10.9067 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 101.3 | 3.6e-32 | 36 | 86 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s TRIDC5AG043000.3 36 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 86 79***********************************************96 PP | |||||||
2 | K-box | 15 | 1e-06 | 112 | 139 | 9 | 36 |
K-box 9 leeakaeslqqelakLkkeienLqreqR 36 +e++ +s+++e+ kLk+++enLqr+qR TRIDC5AG043000.3 112 KENELVQSSRNEYLKLKARVENLQRTQR 139 45667899******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence |
VARRRRRRRR AIDLELAVPD AAAGGDGMGR GRVELKRIEN KINRQVTFAK RRNGLLKKAY 60 ELSVLCDAEV ALIIFSNRGK LYEFCSGRCM PKTLERYQKC SYGGPDTAIQ NKENELVQSS 120 RNEYLKLKAR VENLQRTQR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 8 | RRRRRR |
2 | 3 | 9 | RRRRRRR |
3 | 3 | 10 | RRRRRRRR |
4 | 4 | 9 | RRRRRR |
5 | 4 | 10 | RRRRRRR |
6 | 4 | 11 | RRRRRRRR |
7 | 5 | 10 | RRRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 2e-52 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5AG043000.3 |