PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG042970.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 397aa MW: 42260.1 Da PI: 10.3287

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG042970.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.8	9.7e-41	85	161	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCe+hsk+p v+v+g+e rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+q TRIDC5AG042970.2 85 CAVDGCKADLSKCRDYHRRHKVCEAHSKTPLVVVAGREMRFCQQCSRFHLLAEFDEAKRSCRKRLDGHNRRRRKPQV 161 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
GAGHGRPRRG GHRRRGRARA AGPPRVLRRP QPGRAGGVRP RGGRRDEAAA AARGDGRGER 60 PGGVLRPRPG AGGGGGAGAG HCPSCAVDGC KADLSKCRDY HRRHKVCEAH SKTPLVVVAG 120 REMRFCQQCS RFHLLAEFDE AKRSCRKRLD GHNRRRRKPQ VDSMTSGSFM TRQQGLYSNA 180 GTRFASFSAP RPESSWSGII KSEDSNPYYT TTHQINFAGS SSSYSKEGRR FPFLHEGDQM 240 SFSTGAAALE IPPVCQPLLK AVAPPPPPES SSSNKMFSDG QLTHMLDSDC ALSLLSSPAN 300 SSSVDVSRMV RPSEHIPSVP NLQQFGSSSW FACSQASSAA TGFAAFAGGM DGEQQLNAGG 360 ALVPSSNDNE MNCHGIFHVG ADGSSEGTSP SLPFSWQ

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

GAGHGRPRRG GHRRRGRARA AGPPRVLRRP QPGRAGGVRP RGGRRDEAAA AARGDGRGER  60
PGGVLRPRPG AGGGGGAGAG HCPSCAVDGC KADLSKCRDY HRRHKVCEAH SKTPLVVVAG  120
REMRFCQQCS RFHLLAEFDE AKRSCRKRLD GHNRRRRKPQ VDSMTSGSFM TRQQGLYSNA  180
GTRFASFSAP RPESSWSGII KSEDSNPYYT TTHQINFAGS SSSYSKEGRR FPFLHEGDQM  240
SFSTGAAALE IPPVCQPLLK AVAPPPPPES SSSNKMFSDG QLTHMLDSDC ALSLLSSPAN  300
SSSVDVSRMV RPSEHIPSVP NLQQFGSSSW FACSQASSAA TGFAAFAGGM DGEQQLNAGG  360
ALVPSSNDNE MNCHGIFHVG ADGSSEGTSP SLPFSWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	159	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	8e-39	SBP family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG042970.2