PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5AG040090.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 221aa    MW: 23537.9 Da    PI: 5.0362
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5AG040090.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1695.8e-53781811101
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       ql++fw++q   ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaa++rt++fd
  TRIDC5AG040090.1  78 QLQVFWAEQyreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFD 170
                       89******99999******************************************************************************** PP

             NF-YC  91 flvdivprdel 101
                       flvdivprd+ 
  TRIDC5AG040090.1 171 FLVDIVPRDDA 181
                       ********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
PIPSPLPLPT HNPISPEPMD PTKSSTPPPP PVLGAPVGYP PGAYPPPPGA PAAAYPPQLY  60
APPGAAAAQQ AAAQQQQQLQ VFWAEQYREI EATTDFKNHN LPLARIKKIM KADEDVRMIA  120
AEAPVVFARA CEMFILELTH RGWAHAEENK RRTLQKSDIA AAIARTEVFD FLVDIVPRDD  180
AKDAEAAAAA AMATAAAGIP RPAAGVPATD PNLWASPELM N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RRTLQKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.33e-57NF-YC family protein