 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | TRIDC5AG036880.4 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 293aa MW: 31259 Da PI: 12.0864 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 38.1 | 2.7e-12 | 138 | 167 | 27 | 56 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56
++++ LAk+l+L rqV vWFqNrRa+ k
TRIDC5AG036880.4 138 RKQKVALAKQLNLRPRQVEVWFQNRRARTK 167
567889**********************98 PP
| |||||||
| 2 | HD-ZIP_I/II | 93.8 | 1.9e-30 | 138 | 203 | 26 | 92 |
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
TRIDC5AG036880.4 138 RKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 203
489***********************************************************9.555 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 293 aa Download sequence |
CMPCDEIAAG VVVLRRGDPI CSVPFLRAFG GVDAGVRREP GAVVRGLGLG RLRGGGGGAG 60 GHRRGGAGGR VVLAQRQRGL LPDGLLRARR QRRRPGRRRL ARQRRGRRPL GAQEAAPLQG 120 AGRVPGGELQ GAQHPQPRKQ KVALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR 180 CCETLTEENR RLQKELAELR ALKTVHPFYM HLPATTLSMC PSCERVASNS APASAAAPSP 240 AAPAPASGAG IASPAAAPEQ HRPSSFAALF SSARSFPLAA PQPQPPLPAP SSS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 89 | 94 | RRQRRR |
| 2 | 96 | 103 | GRRRLARQ |
| 3 | 162 | 170 | RRARTKLKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G06710.1 | 8e-52 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Ensembl | TRIDC5AG036880.4 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|