PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG036880.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 277aa MW: 29778.3 Da PI: 12.394

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG036880.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38.2	2.5e-12	140	169	27	56
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 ++++ LAk+l+L rqV vWFqNrRa+ k TRIDC5AG036880.3 140 RKQKVALAKQLNLRPRQVEVWFQNRRARTK 169 567889**********************98 PP
2	HD-ZIP_I/II	93.9	1.7e-30	140	205	26	92
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk TRIDC5AG036880.3 140 RKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 205 489***********************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
VRLVAGAGHA ARAPAHGAQP RLPVAVREQA FGGVDAGVRR EPGAVVRGLG LGRLRGGGGG 60 AGGHRRGGAG GRVVLAQRQR GLLPDGLLRA RRQRRRPGRR RLARQRRGRR PLGAQEAAPL 120 QGAGRVPGGE LQGAQHPQPR KQKVALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL 180 KRCCETLTEE NRRLQKELAE LRALKTVHPF YMHLPATTLS MCPSCERVAS NSAPASAAAP 240 SPAAPAPASG AGIASPAAAP EQHRPSPSLH CRRRRAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	96	RRQRRR
2	98	105	GRRRLARQ
3	164	172	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-52	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG036880.3