PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG036880.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 355aa MW: 37298.6 Da PI: 12.475

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG036880.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.7	3.5e-12	200	229	27	56
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 ++++ LAk+l+L rqV vWFqNrRa+ k TRIDC5AG036880.2 200 RKQKVALAKQLNLRPRQVEVWFQNRRARTK 229 567889**********************98 PP
2	HD-ZIP_I/II	92.2	5.8e-30	201	265	27	92
HD-ZIP_I/II 27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk TRIDC5AG036880.2 201 KQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 265 89***********************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
GAGAELGGGH GGRRPGAGSG ARGRGRGRPG GGEGGRGEKG SRCRRRRQGW ARVGVRLVAG 60 AGHAARAPAH GAQPRLPVAV REHSVPFLRA FGGVDAGVRR EPGAVVRGLG LGRLRGGGGG 120 AGGHRRGGAG GRVVLAQRQR GLLPDGLLRA RRQRRRPGRR RLARQRRGRR PLGAQEAAPL 180 QGAGRVPGGE LQGAQHPQPR KQKVALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL 240 KRCCETLTEE NRRLQKELAE LRALKTVHPF YMHLPATTLS MCPSCERVAS NSAPASAAAP 300 SPAAPAPASG AGIASPAAAP EQHRPSSFAA LFSSARSFPL AAPQPQPPLP APSSS

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

GAGAELGGGH GGRRPGAGSG ARGRGRGRPG GGEGGRGEKG SRCRRRRQGW ARVGVRLVAG  60
AGHAARAPAH GAQPRLPVAV REHSVPFLRA FGGVDAGVRR EPGAVVRGLG LGRLRGGGGG  120
AGGHRRGGAG GRVVLAQRQR GLLPDGLLRA RRQRRRPGRR RLARQRRGRR PLGAQEAAPL  180
QGAGRVPGGE LQGAQHPQPR KQKVALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL  240
KRCCETLTEE NRRLQKELAE LRALKTVHPF YMHLPATTLS MCPSCERVAS NSAPASAAAP  300
SPAAPAPASG AGIASPAAAP EQHRPSSFAA LFSSARSFPL AAPQPQPPLP APSSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	156	RRQRRR
2	158	165	GRRRLARQ
3	224	232	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-51	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG036880.2