PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG036880.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 360aa MW: 37766.3 Da PI: 11.8768

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG036880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.7	3.6e-12	205	234	27	56
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 ++++ LAk+l+L rqV vWFqNrRa+ k TRIDC5AG036880.1 205 RKQKVALAKQLNLRPRQVEVWFQNRRARTK 234 567889**********************98 PP
2	HD-ZIP_I/II	92.2	5.9e-30	206	270	27	92
HD-ZIP_I/II 27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk TRIDC5AG036880.1 206 KQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 270 89***********************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MELGLSLGEA MADAGRELVL GLGVGVGVGP GAAREGEGRR DHDVGAAARG GLALGCGSSP 60 EPAMRLALLP MVPSLGFPWP SESSDPICSV PFLRAFGGVD AGVRREPGAV VRGLGLGRLR 120 GGGGGAGGHR RGGAGGRVVL AQRQRGLLPD GLLRARRQRR RPGRRRLARQ RRGRRPLGAQ 180 EAAPLQGAGR VPGGELQGAQ HPQPRKQKVA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV 240 DCEYLKRCCE TLTEENRRLQ KELAELRALK TVHPFYMHLP ATTLSMCPSC ERVASNSAPA 300 SAAAPSPAAP APASGAGIAS PAAAPEQHRP SSFAALFSSA RSFPLAAPQP QPPLPAPSSS

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MELGLSLGEA MADAGRELVL GLGVGVGVGP GAAREGEGRR DHDVGAAARG GLALGCGSSP  60
EPAMRLALLP MVPSLGFPWP SESSDPICSV PFLRAFGGVD AGVRREPGAV VRGLGLGRLR  120
GGGGGAGGHR RGGAGGRVVL AQRQRGLLPD GLLRARRQRR RPGRRRLARQ RRGRRPLGAQ  180
EAAPLQGAGR VPGGELQGAQ HPQPRKQKVA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV  240
DCEYLKRCCE TLTEENRRLQ KELAELRALK TVHPFYMHLP ATTLSMCPSC ERVASNSAPA  300
SAAAPSPAAP APASGAGIAS PAAAPEQHRP SSFAALFSSA RSFPLAAPQP QPPLPAPSSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	161	RRQRRR
2	163	170	GRRRLARQ
3	229	237	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-51	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG036880.1