PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG020500.16

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 294aa MW: 33058.8 Da PI: 7.9664

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG020500.16	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.8	1e-09	52	74	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ TRIDC5AG020500.16 52 KECPYYMRIGSCKFATNCRFHHP 74 68********************9 PP
2	zf-CCCH	20.1	1.1e-06	200	223	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++f ++G+Ck+ ++Ck++H++ TRIDC5AG020500.16 200 LECQHFVKSGFCKFKAKCKYHHPR 223 58********************96 PP
3	zf-CCCH	26.9	8.2e-09	245	269	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++ r+G Ck+G+ C ++H++ TRIDC5AG020500.16 245 QPVCTYYERYGVCKFGPACMYNHPF 269 789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
RISQNFMLIW CQNQNACMVE PTVDKLKLYQ RCCFLNWIFH ANVVFMILQG GKECPYYMRI 60 GSCKFATNCR FHHPDPSNVV SRDPMLEHEN GDIPQQNVQA SSQLNVPVWS ADQRALNEHC 120 APFLAPASSY SAGMIPPRGM YPSPEWSGYH QVPLGPYYPP GIAFHHFPTP PVNHPMYRGA 180 DVPGHQELPS DEYPERPGQL ECQHFVKSGF CKFKAKCKYH HPRSLVPPPT AGALSPLGLP 240 LRSDQPVCTY YERYGVCKFG PACMYNHPFN FGHPVSAAGP PLSAQYLTSG NYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	8e-43	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG020500.16