PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG019810.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 406aa MW: 42694.8 Da PI: 8.6616

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG019810.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.1	4.5e-42	79	154	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC +dls k+y+ rhkvC hskap v+v+g+eqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ TRIDC5AG019810.1 79 RCQVEGCGVDLSGGKTYYCRHKVCLEHSKAPLVVVAGIEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 154 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
GSGGGGDGGG RRPGDDLHGL NFGQKIYFEQ DVAGSSSSGG RRGKGPAPAR AGGGGGGPGA 60 STPAAAGSAS QQQQQQQPRC QVEGCGVDLS GGKTYYCRHK VCLEHSKAPL VVVAGIEQRF 120 CQQCSRFHQL PEFDQGKRSC RRRLAGHNER RRKPPPGPMS TRYGRLAASF NEDPGRLRSF 180 LLDFTYPRAP AGVRDPWPAV QAGEHRMPGT THWQGGHHEH HPHRSAVAGY GDHHAYNGQG 240 SSSGGGGAPP PMIPGGFELP SDECMAGVAA DSSCALSLLS TQPWDSSAHS SSHNRSPAMS 300 TTSAFQGSPV APSVMASNYM AASSSGSWGS PRGGRSMHHH HQQQQQHHMQ HDTVMSEVHP 360 SSVHHGQFGE LELALQQGRA APNPPHAEHG SGPGGAFSHS SNAMNW

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

GSGGGGDGGG RRPGDDLHGL NFGQKIYFEQ DVAGSSSSGG RRGKGPAPAR AGGGGGGPGA  60
STPAAAGSAS QQQQQQQPRC QVEGCGVDLS GGKTYYCRHK VCLEHSKAPL VVVAGIEQRF  120
CQQCSRFHQL PEFDQGKRSC RRRLAGHNER RRKPPPGPMS TRYGRLAASF NEDPGRLRSF  180
LLDFTYPRAP AGVRDPWPAV QAGEHRMPGT THWQGGHHEH HPHRSAVAGY GDHHAYNGQG  240
SSSGGGGAPP PMIPGGFELP SDECMAGVAA DSSCALSLLS TQPWDSSAHS SSHNRSPAMS  300
TTSAFQGSPV APSVMASNYM AASSSGSWGS PRGGRSMHHH HQQQQQHHMQ HDTVMSEVHP  360
SSVHHGQFGE LELALQQGRA APNPPHAEHG SGPGGAFSHS SNAMNW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	3e-42	SBP family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG019810.1