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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC5AG019660.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | bHLH | ||||||||
| Protein Properties | Length: 338aa MW: 38176 Da PI: 12.6185 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 39.2 | 1.2e-12 | 267 | 312 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+++Er RR +i +++ +L+el+P+ k + +++L +Av+YIk+Lq
TRIDC5AG019660.2 267 SIAERVRRTKISERIRKLQELVPNM----EKQTNTSDMLDLAVDYIKELQ 312
689*********************6....4679****************9 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 338 aa Download sequence |
GLPPGLRRRR CRAPPGQPGP RRRHRLRPLA LRPPPPATPP RDEGQASPPR RQPLHRGPRR 60 RLHGLAAAAA AHVPVAAADG RHGGAVPHGK LRRHGPRRRR QRQPAPAEQL PRRVRQPSEH 120 GQRLREHAQG GHGRRRRRRV QERRRAAQGA AELLVAAGVG DVADLGDGRR GDGRRRQQRR 180 RRGRQQRRRL RRHPRVPGGR PLRRRRLGRR RPRDGAARQV KPQFSLPAGS KPSPSPEIAA 240 IEKFLQFQDS VPCKIRAKRG CATHPRSIAE RVRRTKISER IRKLQELVPN MEKQTNTSDM 300 LDLAVDYIKE LQMQVRMDNA AICVAVCARG SSPEMLGS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 133 | 141 | GRRRRRRVQ |
| 2 | 134 | 139 | RRRRRR |
| 3 | 174 | 190 | RRRQQRRRRGRQQRRRL |
| 4 | 175 | 182 | RRQQRRRR |
| 5 | 175 | 191 | RRRQQRRRRGRQQRRRL |
| 6 | 186 | 192 | QRRRLRR |
| 7 | 187 | 206 | RRRLRRHPRVPGGRPLRRRR |
| 8 | 187 | 207 | RRRLRRHPRVPGGRPLRRRRL |
| 9 | 187 | 203 | RRRQQRRRRGRQQRRRL |
| 10 | 188 | 204 | RRRQQRRRRGRQQRRRL |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G42280.1 | 4e-44 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC5AG019660.2 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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