PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG010240.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 679aa MW: 79456.9 Da PI: 10.4073

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG010240.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.1	3e-08	657	678	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+++++ C+y ++CkF+Hg TRIDC5AG010240.5 657 MCRYYQQGLRCPYEGNCKFSHG 678 7****88**********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
LWSGMARLSI SARKGRKGPV ALEMGNEDID LLAMVDKLMH DGQLEKLKVY ECKAYLRIHK 60 LRLGGKKEEL LNRIRDHIEV KLFGDVKYPV SSFVLNCKGD ACKGDVVMFE QNIYRRKKGD 120 PRGIKGRLCG QRTNAGRIIK ESYGTAKQQH TFTVEIFWSK GYKPWPPLHP LLIKGRNLYK 180 DKTMRQPWPD EKERSRVLEE KHARGFQARK SREVRIHEKE IDKMRRFNRL KDNKSKGKEN 240 MNQISSQTVV PQQKVVSTDT VDQRFDKGRT DSLPQGEPGN ARQQQISSKQ NPAIHLFHQQ 300 FLYQGPSVQH GKPEKTRQQQ ILSRPTTSEQ IFKHPTQHDN HRPTPAQQMF KNPQEHNNHR 360 QQQNKVLPQE GTTKTVSILS RAPCLHYGGS GNAVQQQKVS KPTPMEQIRN QSQPLKREHH 420 NLVLPQEDAK KGTNRVHSID HGKAPCLQYA GPGNAMQQQS SRPALPQQIK NPPQPPKHQH 480 TEVLRQEDGN RTYRVEPVDR RNNNYHNTTY DESAFQRRGT QDAKTHQHGS SGQPHAHGDS 540 QWHQPLRPRI QDFSSRNQEG DYRDHRQTTR EQYNPQERHH HNQHGRGQMI QEQYQPQKIH 600 HQNEHDSWRM NQNQYHPQEN HHQNGHDSWR MNHNQYHPQE NHHQNYRYTQ QFPAPKMCRY 660 YQQGLRCPYE GNCKFSHGS

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

LWSGMARLSI SARKGRKGPV ALEMGNEDID LLAMVDKLMH DGQLEKLKVY ECKAYLRIHK  60
LRLGGKKEEL LNRIRDHIEV KLFGDVKYPV SSFVLNCKGD ACKGDVVMFE QNIYRRKKGD  120
PRGIKGRLCG QRTNAGRIIK ESYGTAKQQH TFTVEIFWSK GYKPWPPLHP LLIKGRNLYK  180
DKTMRQPWPD EKERSRVLEE KHARGFQARK SREVRIHEKE IDKMRRFNRL KDNKSKGKEN  240
MNQISSQTVV PQQKVVSTDT VDQRFDKGRT DSLPQGEPGN ARQQQISSKQ NPAIHLFHQQ  300
FLYQGPSVQH GKPEKTRQQQ ILSRPTTSEQ IFKHPTQHDN HRPTPAQQMF KNPQEHNNHR  360
QQQNKVLPQE GTTKTVSILS RAPCLHYGGS GNAVQQQKVS KPTPMEQIRN QSQPLKREHH  420
NLVLPQEDAK KGTNRVHSID HGKAPCLQYA GPGNAMQQQS SRPALPQQIK NPPQPPKHQH  480
TEVLRQEDGN RTYRVEPVDR RNNNYHNTTY DESAFQRRGT QDAKTHQHGS SGQPHAHGDS  540
QWHQPLRPRI QDFSSRNQEG DYRDHRQTTR EQYNPQERHH HNQHGRGQMI QEQYQPQKIH  600
HQNEHDSWRM NQNQYHPQEN HHQNGHDSWR MNHNQYHPQE NHHQNYRYTQ QFPAPKMCRY  660
YQQGLRCPYE GNCKFSHGS

Link Out ? help Back to Top
Ensembl	TRIDC5AG010240.5