PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5AG005850.9

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 722aa MW: 80004.6 Da PI: 6.4777

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5AG005850.9	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.9	1.9e-23	44	144	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ TRIDC5AG005850.9 44 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WN 133 99****************************9999996.9**********************************************..67 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 ++ +l+++++ TRIDC5AG005850.9 134 DNNQLLLGIRH 144 67777888876 PP
2	Auxin_resp	117.7	9.9e-39	170	253	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k TRIDC5AG005850.9 170 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 253 79*******************************9789****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MHADAETDEV YAQMTLQPLS PEEQKEPFLP IELGAASKQP TNYFCKTLTA SDTSTHGGFS 60 VPRRSAEKVF PPLDFSLQPP CQELIAKDLH DNEWKFRHIF RGQPKRHLLT TGWSVFVSAK 120 RLVAGDSVIF IWNDNNQLLL GIRHANRPQT IMPSSVLSSD SMHIGLLAAA AHAAATNSRF 180 TIFYNPRASP SEFIIPLAKY VKSVYHTRVS VGMRFRMLFE TEESSVRRYM GTITTISDLD 240 SVRWPNSHWR SVKVGWDEST AGEKQPRVSL WEIEPLTTFP MYPTAFPLRL KRPWASGLPS 300 MHGMFNALMW LGDGDRGAQS LNFQGVGASP WLQPRMDSPL LGLKPDTYQQ MAAAALEEIR 360 TGDPSKQSSA LLQFQQTQNP NGGLNSVYAN HVLQQMQYQA QQSSLQTVQH GHSQYSGNPG 420 FLQSQFQQLH LHNPPAPPQQ GHQVIQQSHQ EIMPGSESAS QSQSSFYQQN LLEGNNDPSL 480 HLHNGFRNFS SQDSSNLVSL PRTDQLMAPE GWPSKRLAVE PLGHIESRSV QPKHENVNHQ 540 SNMSHFAGTL APQSARDSSS VQDGMAGARG GSSSGTVSMA IPLLRYSGED LPPADTLATS 600 SCLGESGTFN SLDNMCGVNP SQDGTFVKVY KSGSPGRSLD ITRFSSYYEL RSELEHLFGL 660 EGQLEDPVRS GWQLVFVDRE NDILLVGDDP WQEFVNSVGC IKILSQQEVQ QMVRGGEGLL 720 SS

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MHADAETDEV YAQMTLQPLS PEEQKEPFLP IELGAASKQP TNYFCKTLTA SDTSTHGGFS  60
VPRRSAEKVF PPLDFSLQPP CQELIAKDLH DNEWKFRHIF RGQPKRHLLT TGWSVFVSAK  120
RLVAGDSVIF IWNDNNQLLL GIRHANRPQT IMPSSVLSSD SMHIGLLAAA AHAAATNSRF  180
TIFYNPRASP SEFIIPLAKY VKSVYHTRVS VGMRFRMLFE TEESSVRRYM GTITTISDLD  240
SVRWPNSHWR SVKVGWDEST AGEKQPRVSL WEIEPLTTFP MYPTAFPLRL KRPWASGLPS  300
MHGMFNALMW LGDGDRGAQS LNFQGVGASP WLQPRMDSPL LGLKPDTYQQ MAAAALEEIR  360
TGDPSKQSSA LLQFQQTQNP NGGLNSVYAN HVLQQMQYQA QQSSLQTVQH GHSQYSGNPG  420
FLQSQFQQLH LHNPPAPPQQ GHQVIQQSHQ EIMPGSESAS QSQSSFYQQN LLEGNNDPSL  480
HLHNGFRNFS SQDSSNLVSL PRTDQLMAPE GWPSKRLAVE PLGHIESRSV QPKHENVNHQ  540
SNMSHFAGTL APQSARDSSS VQDGMAGARG GSSSGTVSMA IPLLRYSGED LPPADTLATS  600
SCLGESGTFN SLDNMCGVNP SQDGTFVKVY KSGSPGRSLD ITRFSSYYEL RSELEHLFGL  660
EGQLEDPVRS GWQLVFVDRE NDILLVGDDP WQEFVNSVGC IKILSQQEVQ QMVRGGEGLL  720
SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC5AG005850.9