PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5AG005850.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 800aa MW: 88293.5 Da PI: 6.2933 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.7 | 2.2e-23 | 44 | 144 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ TRIDC5AG005850.7 44 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WN 133 99******************************9999996.9************************************************..67 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 ++ +l+++++ TRIDC5AG005850.7 134 DNNQLLLGIRH 144 67777888876 PP | |||||||
2 | Auxin_resp | 117.5 | 1.1e-38 | 170 | 253 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k TRIDC5AG005850.7 170 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 253 79*********************************9789******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 800 aa Download sequence |
MHADAETDEV YAQMTLQPLS PEEQKEPFLP IELGAASKQP TNYFCKTLTA SDTSTHGGFS 60 VPRRSAEKVF PPLDFSLQPP CQELIAKDLH DNEWKFRHIF RGQPKRHLLT TGWSVFVSAK 120 RLVAGDSVIF IWNDNNQLLL GIRHANRPQT IMPSSVLSSD SMHIGLLAAA AHAAATNSRF 180 TIFYNPRASP SEFIIPLAKY VKSVYHTRVS VGMRFRMLFE TEESSVRRYM GTITTISDLD 240 SVRWPNSHWR SVKVGWDEST AGEKQPRVSL WEIEPLTTFP MYPTAFPLRL KRPWASGLPS 300 MHGVKNDDFA RYSSLMWLGD GDRGAQSLNF QGVGASPWLQ PRMDSPLLGL KPDTYQQMAA 360 AALEEIRTGD PSKQSSALLQ FQQTQNPNGG LNSVYANHVL QQMQYQAQQS SLQTVQHGHS 420 QYSGNPGFLQ SQFQQLHLHN PPAPPQQGHQ VIQQSHQEMQ QQLSSGCHRI SDIDSSMPGS 480 ESASQSQSSF YQQNLLEGNN DPSLHLHNGF RNFSSQDSSN LVSLPRTDQL MAPEGWPSKR 540 LAVEPLGHIE SRSVQPKHEN VNHQSNMSHF AGTLAPQSAR DSSSVQAYGA NVDNQFLSSS 600 FAFQDGMAGA RGGSSSGTVS MAIPLLRYSG EDLPPADTLA TSSCLGESGT FNSLDNMCGV 660 NPSQDGTFVK VYKSGSPGRS LDITRFSSYY ELRSELEHLF GLEGQLEDPV RSGWQLVFVD 720 RENDILLVGD DPWQEFVNSV GCIKILSQQE VQQMVRGGEG LLSSAPGARM AQGNVCDGYS 780 GGHDLQNLTG NMASVPPLDY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5AG005850.7 |