PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5AG005850.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 874aa    MW: 96447.7 Da    PI: 6.2855
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5AG005850.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.5e-23114214198
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  TRIDC5AG005850.4 114 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WN 203
                       99******************************9999996.9************************************************..67 PP

                       SEE..EEEEE- CS
                B3  88 sefelvvkvfr 98 
                       ++ +l+++++ 
  TRIDC5AG005850.4 204 DNNQLLLGIRH 214
                       67777888875 PP
2Auxin_resp117.31.3e-38240323183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k
  TRIDC5AG005850.4 240 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 323
                       79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    
DREQRCLNSE LWHACAGPLV SLPAVGSRVI YFPQGHSEQV AASTNKEVDA QIPNYPNLPP  60
QLICQLHNVT MHADAETDEV YAQMTLQPLS PEEQKEPFLP IELGAASKQP TNYFCKTLTA  120
SDTSTHGGFS VPRRSAEKVF PPLDFSLQPP CQELIAKDLH DNEWKFRHIF RGQPKRHLLT  180
TGWSVFVSAK RLVAGDSVIF IWNDNNQLLL GIRHANRPQT IMPSSVLSSD SMHIGLLAAA  240
AHAAATNSRF TIFYNPRASP SEFIIPLAKY VKSVYHTRVS VGMRFRMLFE TEESSVRRYM  300
GTITTISDLD SVRWPNSHWR SVKVGWDEST AGEKQPRVSL WEIEPLTTFP MYPTAFPLRL  360
KRPWASGLPS MHGMFNGVKN DDFARYSSLM WLGDGDRGAQ SLNFQGVGAS PWLQPRMDSP  420
LLGLKPDTYQ QMAAAALEEI RTGDPSKQSS ALLQFQQTQN PNGGLNSVYA NHVLQQMQYQ  480
AQQSSLQTVQ HGHSQYSGNP GFLQSQFQQL HLHNPPAPPQ QGHQVIQQSH QEMQQQLSSG  540
CHRISDIDSS MPGSESASQS QSSFYQQNLL EGNNDPSLHL HNGFRNFSSQ DSSNLVSLPR  600
TDQLMAPEGW PSKRLAVEPL GHIESRSVQP KHENVNHQSN MSHFAGTLAP QSARDSSSVQ  660
AYGANVDNQF LSSSFAFQDG MAGARGGSSS GTVSMAIPLL RYSGEDLPPA DTLATSSCLG  720
ESGTFNSLDN MCGVNPSQDG TFVKVYKSGS PGRSLDITRF SSYYELRSEL EHLFGLEGQL  780
EDPVRSGWQL VFVDRENDIL LVGDDPWQEF VNSVGCIKIL SQQEVQQMVR GGEGLLSSAP  840
GARMAQGNVC DGYSGGHDLQ NLTGNMASVP PLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein