PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5AG005850.3
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 806aa    MW: 88948.3 Da    PI: 6.2523
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5AG005850.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.2e-2346146198
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  TRIDC5AG005850.3  46 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WN 135
                       99******************************9999996.9************************************************..67 PP

                       SEE..EEEEE- CS
                B3  88 sefelvvkvfr 98 
                       ++ +l+++++ 
  TRIDC5AG005850.3 136 DNNQLLLGIRH 146
                       67777888876 PP
2Auxin_resp117.51.2e-38172255183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k
  TRIDC5AG005850.3 172 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 255
                       79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    
MLTQADAETD EVYAQMTLQP LSPEEQKEPF LPIELGAASK QPTNYFCKTL TASDTSTHGG  60
FSVPRRSAEK VFPPLDFSLQ PPCQELIAKD LHDNEWKFRH IFRGQPKRHL LTTGWSVFVS  120
AKRLVAGDSV IFIWNDNNQL LLGIRHANRP QTIMPSSVLS SDSMHIGLLA AAAHAAATNS  180
RFTIFYNPRA SPSEFIIPLA KYVKSVYHTR VSVGMRFRML FETEESSVRR YMGTITTISD  240
LDSVRWPNSH WRSVKVGWDE STAGEKQPRV SLWEIEPLTT FPMYPTAFPL RLKRPWASGL  300
PSMHGMFNGV KNDDFARYSS LMWLGDGDRG AQSLNFQGVG ASPWLQPRMD SPLLGLKPDT  360
YQQMAAAALE EIRTGDPSKQ SSALLQFQQT QNPNGGLNSV YANHVLQQMQ YQAQQSSLQT  420
VQHGHSQYSG NPGFLQSQFQ QLHLHNPPAP PQQGHQVIQQ SHQEMQQQLS SGCHRISDID  480
SSMPGSESAS QSQSSFYQQN LLEGNNDPSL HLHNGFRNFS SQDSSNLVSL PRTDQLMAPE  540
GWPSKRLAVE PLGHIESRSV QPKHENVNHQ SNMSHFAGTL APQSARDSSS VQAYGANVDN  600
QFLSSSFAFQ DGMAGARGGS SSGTVSMAIP LLRYSGEDLP PADTLATSSC LGESGTFNSL  660
DNMCGVNPSQ DGTFVKVYKS GSPGRSLDIT RFSSYYELRS ELEHLFGLEG QLEDPVRSGW  720
QLVFVDREND ILLVGDDPWQ EFVNSVGCIK ILSQQEVQQM VRGGEGLLSS APGARMAQGN  780
VCDGYSGGHD LQNLTGNMAS VPPLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0ARF family protein