PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5AG005850.13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 876aa MW: 96647 Da PI: 6.3192 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.5 | 2.5e-23 | 120 | 220 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F + TRIDC5AG005850.13 120 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--W 208 99******************************9999996.9************************************************..6 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++ +l+++++ TRIDC5AG005850.13 209 NDNNQLLLGIRH 220 767777888875 PP | |||||||
2 | Auxin_resp | 117.3 | 1.3e-38 | 246 | 329 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k TRIDC5AG005850.13 246 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 329 79*********************************9789******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 876 aa Download sequence |
MCAWHFSGEQ RCLNSELWHA CAGPLVSLPA VGSRVIYFPQ GHSEQVAAST NKEVDAQIPN 60 YPNLPPQLIC QLHNVTMHAD AETDEVYAQM TLQPLSPEEQ KEPFLPIELG AASKQPTNYF 120 CKTLTASDTS THGGFSVPRR SAEKVFPPLD FSLQPPCQEL IAKDLHDNEW KFRHIFRGQP 180 KRHLLTTGWS VFVSAKRLVA GDSVIFIWND NNQLLLGIRH ANRPQTIMPS SVLSSDSMHI 240 GLLAAAAHAA ATNSRFTIFY NPRASPSEFI IPLAKYVKSV YHTRVSVGMR FRMLFETEES 300 SVRRYMGTIT TISDLDSVRW PNSHWRSVKV GWDESTAGEK QPRVSLWEIE PLTTFPMYPT 360 AFPLRLKRPW ASGLPSMHGV KNDDFARYSS LMWLGDGDRG AQSLNFQGVG ASPWLQPRMD 420 SPLLGLKPDT YQQMAAAALE EIRTGDPSKQ SSALLQFQQT QNPNGGLNSV YANHVLQQMQ 480 YQAQQSSLQT VQHGHSQYSG NPGFLQSQFQ QLHLHNPPAP PQQGHQVIQQ SHQEMQQQLS 540 SGCHRISDID SSMPGSESAS QSQSSFYQQN LLEGNNDPSL HLHNGFRNFS SQDSSNLVSL 600 PRTDQLMAPE GWPSKRLAVE PLGHIESRSV QPKHENVNHQ SNMSHFAGTL APQSARDSSS 660 VQAYGANVDN QFLSSSFAFQ DGMAGARGGS SSGTVSMAIP LLRYSGEDLP PADTLATSSC 720 LGESGTFNSL DNMCGVNPSQ DGTFVKVYKS GSPGRSLDIT RFSSYYELRS ELEHLFGLEG 780 QLEDPVRSGW QLVFVDREND ILLVGDDPWQ EFVNSVGCIK ILSQQEVQQM VRGGEGLLSS 840 APGARMAQGN VCDGYSGGHD LQNLTGNMAS VPPLDY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5AG005850.13 |