PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5AG005850.12
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 423aa    MW: 47543.1 Da    PI: 8.1658
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5AG005850.12genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.17.9e-24120220198
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +
  TRIDC5AG005850.12 120 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--W 208
                        99******************************9999996.9************************************************..6 PP

                        SSEE..EEEEE- CS
                 B3  87 rsefelvvkvfr 98 
                        +++ +l+++++ 
  TRIDC5AG005850.12 209 NDNNQLLLGIRH 220
                        767777888876 PP
2Auxin_resp118.84.4e-39246329183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k
  TRIDC5AG005850.12 246 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 329
                        79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    
MCAWHFSGEQ RCLNSELWHA CAGPLVSLPA VGSRVIYFPQ GHSEQVAAST NKEVDAQIPN  60
YPNLPPQLIC QLHNVTMHAD AETDEVYAQM TLQPLSPEEQ KEPFLPIELG AASKQPTNYF  120
CKTLTASDTS THGGFSVPRR SAEKVFPPLD FSLQPPCQEL IAKDLHDNEW KFRHIFRGQP  180
KRHLLTTGWS VFVSAKRLVA GDSVIFIWND NNQLLLGIRH ANRPQTIMPS SVLSSDSMHI  240
GLLAAAAHAA ATNSRFTIFY NPRASPSEFI IPLAKYVKSV YHTRVSVGMR FRMLFETEES  300
SVRRYMGTIT TISDLDSVRW PNSHWRSVKV GWDESTAGEK QPRVSLWEIE PLTTFPMYPT  360
AFPLRLKRPW ASGLPSMHGM FNGVKNDDFA RYSSLMWLGD GDRGAQSLNF QGVGASPWLQ  420
PRM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0ARF family protein